Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_D19
         (460 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    26   3.2  
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    25   4.2  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   5.6  
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   7.3  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   7.3  
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    24   9.7  
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces...    24   9.7  

>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +1

Query: 109 VLGIVKDCVDDDVYMCLKEKVL 174
           V+  VK+ +DDD+Y  LKEK+L
Sbjct: 107 VVNCVKE-IDDDLYNTLKEKLL 127


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 350 SKKSAAESTNLDSTCASLAFGSSDSGSKARA 258
           +K + ++ +NL++  A L FG   + S ARA
Sbjct: 329 AKSTKSDDSNLNANFARLGFGQFAAASNARA 359


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
 Frame = -3

Query: 227 TPSIKVISLFDLKVSAYFKTFSLRHIYTSSSTQSLTMPKTL-----PPIPRSVDS 78
           +PS    S      S+ F+ FS R     SST +L +   L     PP PR+  S
Sbjct: 584 SPSPSATSSIKKNPSSIFRRFSSRRKQNKSSTSTLQISAPLETSQSPPTPRTKPS 638


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 220 DGVTLESKGSPRSARALEPLSDEPKAREAQVESR 321
           D V+  S+ + +S   + P+SD+PK   ++ E+R
Sbjct: 167 DVVSPSSELNAQSVNNILPISDDPKDSTSEAETR 200


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 113  WALLRTVSTMTCICASRRRF 172
            W L +TV +M CI A +R F
Sbjct: 1702 WCLAKTVLSMLCIIAIQRFF 1721


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -2

Query: 255 PWRTFALQGDTINQSYLPLRPQSLCIFQNLLLEAHIHVIVDTVLNNAQNAATDSKI 88
           P + + L+   I  S+  LR     I ++L  E+H+     T L + +NA+ D KI
Sbjct: 5   PEQQYILEKPGILLSFEQLRINFKHILRHLEHESHVINSTLTTLISQENASMDEKI 60


>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
 Frame = -3

Query: 305 ASLAFGSSDSGSKARADLGEPLLSKVTPSI---KVISLFDLKVSAYFKTFSLRHIYTSSS 135
           A L  GS  SG       G+PL   +TP     KV   +  ++   FK  S+  + +  +
Sbjct: 41  AELWMGSHPSGPSFVMQTGKPLSELLTPETVGEKVYKKYGKQLPFLFKVLSINKVLSIQA 100

Query: 134 TQSLTMPKTL 105
                + K L
Sbjct: 101 HPDKPLGKQL 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.133    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,897,772
Number of Sequences: 5004
Number of extensions: 36309
Number of successful extensions: 107
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)