Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_D19
(460 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 28 3.1
10_08_0569 + 18844910-18845249,18845353-18845471,18846557-18846568 27 5.5
08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671 27 5.5
07_03_1347 + 25932185-25932748,25933151-25933755,25935797-259362... 27 7.3
04_01_0615 - 8060085-8060972 27 7.3
03_04_0053 + 16873735-16873927,16874011-16874162,16874286-168743... 27 7.3
05_02_0099 - 6582498-6582725,6583148-6583235,6583437-6583830,658... 27 9.6
03_06_0221 + 32458867-32459149,32460271-32460386,32460461-324608... 27 9.6
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 28.3 bits (60), Expect = 3.1
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +1
Query: 232 LESKGSPRSARALEPLSDEPKAREAQVESRLVDSAADFLENYVIQFKMPSSA 387
L+ KGSPRS + P+ E +E+Q+ D L++ V+Q PS A
Sbjct: 3519 LQDKGSPRSTQPPPPI--ESSEKESQIAE---DGQTVLLQSSVVQESTPSLA 3565
>10_08_0569 + 18844910-18845249,18845353-18845471,18846557-18846568
Length = 156
Score = 27.5 bits (58), Expect = 5.5
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = -3
Query: 251 GEPLLSKVTPSIKVISLFD-LKVSAYFKTFSLRHIYTSSSTQS--LTMPKTLPPIPRSVD 81
G+ L ++ P + V+ L D ++ Y + R Y+SSS+ S P+ PP P +
Sbjct: 13 GDVLTFRLHP-LAVLKLSDRIREFQYQAAAAARVSYSSSSSSSSGTAAPEDPPPPPTRMS 71
Query: 80 SCSVGI 63
C +G+
Sbjct: 72 GCVIGV 77
>08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671
Length = 502
Score = 27.5 bits (58), Expect = 5.5
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 142 DVYM-CLKEKVLKYAETLRSKREITLIDGVTLESKGSPRSARALEPLSDEPKAREAQVES 318
DV++ CLKE + ETL + EI + DG G SA+ S E + E+
Sbjct: 197 DVHLSCLKELMSHSHETLTNLYEILMEDGTPTNDCGEGASAQDNSSYSGESNGDAEEFEN 256
Query: 319 R 321
+
Sbjct: 257 Q 257
>07_03_1347 +
25932185-25932748,25933151-25933755,25935797-25936214,
25936433-25936555,25936775-25936989,25937157-25937412,
25937844-25938149,25938764-25938820,25939635-25939685
Length = 864
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 146 TSSSTQSLTMPKTLPPIPRSVDSCSVGI 63
+S+ST S T+ + PP PRS+ SC I
Sbjct: 6 SSTSTPSSTIERLRPPYPRSI-SCHASI 32
>04_01_0615 - 8060085-8060972
Length = 295
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 67 ASRAPPRLKVGQPRKPSYRSLV 2
+S APP +G PRKP +R+ +
Sbjct: 191 SSAAPPAWDLGGPRKPHFRAAI 212
>03_04_0053 +
16873735-16873927,16874011-16874162,16874286-16874380,
16874704-16874818,16875054-16875343,16875436-16875585,
16876478-16876598,16876671-16876942,16877466-16877937
Length = 619
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +1
Query: 172 LKYAETLRSKREITLIDGVTLESKGSPRSARALEPLSDEPKAREAQVESRLVDSAADFLE 351
L + LRS R++ L D V + KG + + D+P + +AA F++
Sbjct: 384 LNQVKVLRSMRQLRLEDVVVGQYKGHSKGGKTYPAYVDDPTVPSGSITPTFA-AAALFID 442
Query: 352 N 354
N
Sbjct: 443 N 443
>05_02_0099 -
6582498-6582725,6583148-6583235,6583437-6583830,
6585855-6585990,6586413-6586931
Length = 454
Score = 26.6 bits (56), Expect = 9.6
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 191 KVSAYFKTFSL-RHIYTSSSTQSLTMPKTLPPIPRSVDSCSVG 66
KVS + L +H SSS+ MP LPP P S ++ ++G
Sbjct: 46 KVSRRLHSLDLPKHHRRSSSSSPPPMPPPLPPPPPSANAPTLG 88
>03_06_0221 +
32458867-32459149,32460271-32460386,32460461-32460807,
32461231-32461411,32461507-32461629,32461828-32462115,
32462536-32462688,32463068-32463169,32463260-32463313,
32463518-32463624,32463867-32463927,32464019-32464150,
32464245-32464382,32464459-32464539,32464635-32464715,
32465133-32465213,32465300-32465413
Length = 813
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 82 IPVRWASRAPPRLKVGQPRKPS 17
+P A+R P R+K+GQP+ P+
Sbjct: 80 LPQPSAARKPLRIKIGQPKLPT 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.133 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,463,268
Number of Sequences: 37544
Number of extensions: 276328
Number of successful extensions: 689
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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