Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_D17
         (350 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce...    37   8e-04
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    28   0.37 
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe...    27   0.85 
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   3.4  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    25   4.5  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    24   6.0  

>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 37.1 bits (82), Expect = 8e-04
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +1

Query: 1   AQCQWAQKLANKEKRAQMTDYDRFK-LTSARVKRNRARTAVFKSLK 135
           A   WA+KL  K+ R+Q+ D+DRF  +   + +R +   AV K+LK
Sbjct: 88  ASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQVNVAVAKALK 133


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 28.3 bits (60), Expect = 0.37
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 173 KSPKAQLKSYARRNP-TAKNQQRSNSFVPESSVK 271
           K+ KAQL+S A++NP  A   Q S SF P   ++
Sbjct: 446 KARKAQLQSMAQKNPLAASGLQSSLSFTPIQGIE 479


>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 27.1 bits (57), Expect = 0.85
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 79  TSARVKRNRARTAVFKSLKVKAARAGVFGKSKIPKSA 189
           T     +NR  T+ F     + A AG+FG+S  P  +
Sbjct: 160 TGGLFDQNRPNTSTFGQFSTQPASAGLFGQSTQPSGS 196


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 4    QCQWAQKLANKEKRAQMTDYDRFKL-TSARVKRNRAR 111
            Q Q A KLA +      T+YD ++L TS  +++N  +
Sbjct: 944  QLQAASKLAEEMVERVKTEYDEYRLQTSESLEKNHLK 980


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = +3

Query: 72  QADVGPC*EESCKNSSV*KLEGESGARWCLRQK*NPQKRS*KATHEETQQQKTSKEVILL 251
           Q+D  P   E+C    + K   +S A W + Q  NP      AT +     K  K V +L
Sbjct: 257 QSDFVPSVSENCTPLELLKTVFQSPAPWDVHQLYNPDSLDVFATTDTLGLIKVGKNVPIL 316


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 200 SFLTALLGILLLPKTPARAAFTFKLLNTAVLARFLLTR 87
           SFL    G+ +   +     F F +  TA+L+ FL+ R
Sbjct: 375 SFLQVSYGLSIDMSSLTLNVFVFSMTTTAILSGFLMKR 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,012,369
Number of Sequences: 5004
Number of extensions: 15217
Number of successful extensions: 77
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)