Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_D17
         (350 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979...    40   7e-04
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254...    34   0.027
04_03_0611 - 18011469-18012563,18012756-18012920,18013542-180136...    28   2.4  
05_04_0107 - 18039942-18040123,18040228-18040474                       27   5.5  
02_04_0591 - 24159654-24160155,24160233-24160316,24160898-241609...    26   9.6  
01_04_0043 + 15375459-15377606                                         26   9.6  

>02_04_0659 -
           24797477-24797533,24797614-24797726,24797814-24797943,
           24798727-24798828,24798951-24798953
          Length = 134

 Score = 39.5 bits (88), Expect = 7e-04
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +1

Query: 13  WAQKLANKEKRAQMTDYDRFKLTSARVKRNRARTAVFKSLKVKAA 147
           W +KL  +++RA + D+DRFK+  A++KR  A       LK  AA
Sbjct: 89  WGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKLKKTAA 133


>04_04_0506 -
           25723809-25724299,25725082-25725237,25725316-25725445,
           25726484-25726585,25726630-25726671
          Length = 306

 Score = 34.3 bits (75), Expect = 0.027
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = +1

Query: 13  WAQKLANKEKRAQMTDYDRFKLTSARVK 96
           W +KL  +++RA + D+DRFK+  A++K
Sbjct: 102 WGKKLIVQKRRASLNDFDRFKVMLAKIK 129


>04_03_0611 -
           18011469-18012563,18012756-18012920,18013542-18013639,
           18014541-18015498
          Length = 771

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 176 ILLLPKTPARAAFTFKLLNTAVLARFLLTRADVSLNLS*SVICAL 42
           IL L  TP   A  FK+L    + R  L     ++NL  S++C +
Sbjct: 338 ILTLTDTP-NVAVAFKILMNVNMERITLAMEIATINLEVSIVCVM 381


>05_04_0107 - 18039942-18040123,18040228-18040474
          Length = 142

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 117 CCSCTIPLNTGRRQLESVVVGH 52
           CC C + L+ G  QL  VVV H
Sbjct: 11  CCRCQLHLHRGGEQLVVVVVHH 32


>02_04_0591 -
           24159654-24160155,24160233-24160316,24160898-24160944,
           24161035-24161103,24161259-24161310,24161693-24161775,
           24162312-24162422,24162808-24163211,24163308-24163380,
           24163460-24163510,24163882-24164073,24164176-24164302,
           24164753-24164934,24165023-24165226,24165738-24165836
          Length = 759

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 64  DRFKLTSARVKRNRARTAVFKSLKVKAARAGVFGKSKIPKS 186
           +R   + A VK  R R    KSL+ KAA   V G  K+ ++
Sbjct: 348 ERVDGSPAMVKSKRGRPPGLKSLEKKAAGKKVLGLKKVEET 388


>01_04_0043 + 15375459-15377606
          Length = 715

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 292 FFNLSQSFNTAFWHKRITSLLVFCCWVSSCVA 197
           +  L+  + + +W   + S+LVF  WV SC+A
Sbjct: 314 YSKLTVFYASGWWFPVLNSMLVFATWV-SCLA 344


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,345,147
Number of Sequences: 37544
Number of extensions: 91463
Number of successful extensions: 293
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)