Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_D17
(350 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical pr... 42 1e-04
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p... 31 0.31
U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like... 31 0.31
AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3 ... 31 0.31
AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical ... 29 1.2
AF125971-2|AAN73291.1| 458|Caenorhabditis elegans Hypothetical ... 28 2.2
AC006665-2|AAF39904.1| 341|Caenorhabditis elegans Hypothetical ... 27 2.9
Z70783-9|CAA94857.2| 455|Caenorhabditis elegans Hypothetical pr... 27 3.8
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 27 3.8
U72347-1|AAD12189.1| 101|Caenorhabditis elegans putative transc... 26 6.6
U55375-4|AAC69042.3| 287|Caenorhabditis elegans Lim domain fami... 26 6.6
>Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical
protein C04F12.4 protein.
Length = 135
Score = 41.9 bits (94), Expect = 1e-04
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = +1
Query: 10 QWAQKLANKEKRAQMTDYDRFKLTSARVKRNRARTAVFKSLK 135
QWA+K+A + RA++TD++R+KL A+ RNR LK
Sbjct: 90 QWAKKIAQRAIRAKLTDFERYKLMKAKQMRNRIVRVELAKLK 131
>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
protein Y49E10.19 protein.
Length = 1159
Score = 30.7 bits (66), Expect = 0.31
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 4 QCQWAQKLANKEKRAQMTDYDRFKLTSARVKRNRARTAVFKSLKVKAAR 150
+ QWA ++ RA +T+YDR K R+ T L V AR
Sbjct: 807 EAQWAMLRHVEKHRALLTEYDRLKRDGPRIIDGPRGTITVSQLSVNMAR 855
>U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like
protein 3 protein.
Length = 208
Score = 30.7 bits (66), Expect = 0.31
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +1
Query: 16 AQKLANKEKRAQMTDYDRFKLTSARVKRNRARTAVFKSLKVKAARAGVFGKSKIPKSA 189
AQK A EK+A+ T + K T+ +VK+ ++ + K K A++ K PK A
Sbjct: 139 AQKAATGEKKAKKTTATKTKKTADKVKKVKSPKKIAKPTAKKVAKSP--AKKSAPKKA 194
>AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3
protein.
Length = 208
Score = 30.7 bits (66), Expect = 0.31
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +1
Query: 16 AQKLANKEKRAQMTDYDRFKLTSARVKRNRARTAVFKSLKVKAARAGVFGKSKIPKSA 189
AQK A EK+A+ T + K T+ +VK+ ++ + K K A++ K PK A
Sbjct: 139 AQKAATGEKKAKKTTATKTKKTADKVKKVKSPKKIAKPTAKKVAKSP--AKKSAPKKA 194
>AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical
protein Y20F4.4 protein.
Length = 1319
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 167 KVKSPKAQLKSYARRNPTAKNQQRSNS 247
+V SP AQ SYARRN ++ +S S
Sbjct: 1260 RVNSPPAQSTSYARRNDGKRHPSKSRS 1286
>AF125971-2|AAN73291.1| 458|Caenorhabditis elegans Hypothetical
protein Y4C6B.4a protein.
Length = 458
Score = 27.9 bits (59), Expect = 2.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 262 AFWHKRITSLLVFCCWV 212
+F+ T LL+FCCWV
Sbjct: 184 SFYFHSATCLLIFCCWV 200
>AC006665-2|AAF39904.1| 341|Caenorhabditis elegans Hypothetical
protein H27M09.5 protein.
Length = 341
Score = 27.5 bits (58), Expect = 2.9
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Frame = +2
Query: 140 KRRALVSSAK----VKSPKAQLKSYAR--RNPTAKNQQRSNSFVPESSVK 271
K+ A +S+ K +K PK K A+ RNP +RSNS PE K
Sbjct: 273 KKSAKISTKKLISTIKPPKTLSKKSAKSTRNPLKSPSKRSNSVRPEKKNK 322
>Z70783-9|CAA94857.2| 455|Caenorhabditis elegans Hypothetical
protein ZK856.9 protein.
Length = 455
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 158 SSAKVKSPKAQLKSYARRNPTAKNQQRSNSFVP 256
SS KSP+ +K+Y R+ KN + S +P
Sbjct: 45 SSEDEKSPEDVIKAYKRKIENQKNVENEESVIP 77
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 27.1 bits (57), Expect = 3.8
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = +3
Query: 21 EISKQREESTDDRLRQIQADVGPC*EESCKNSSV*KLEGESGARWCLRQK*NPQKRS*KA 200
E K+REE +DR ++ + ++ S +SS ES ++K K+S K
Sbjct: 246 ENEKKREELKEDRRKEKKREMRAVRNVSEDDSSTSSESEESDFEQKKKKKVKKSKKSKKD 305
Query: 201 THEETQQQKTSKE 239
+E +++K SK+
Sbjct: 306 KKKEKKEKKKSKK 318
>U72347-1|AAD12189.1| 101|Caenorhabditis elegans putative
transcription factor LIM-6 protein.
Length = 101
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 141 FHLQAFKHCCSCTIPLNTG 85
+H Q F CCSC P N G
Sbjct: 1 YHAQCFS-CCSCQRPFNLG 18
>U55375-4|AAC69042.3| 287|Caenorhabditis elegans Lim domain family
protein 6 protein.
Length = 287
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 141 FHLQAFKHCCSCTIPLNTG 85
+H Q F CCSC P N G
Sbjct: 101 YHAQCFS-CCSCQRPFNLG 118
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,690,469
Number of Sequences: 27780
Number of extensions: 87735
Number of successful extensions: 294
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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