Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_D16
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    28   1.3  
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    27   1.7  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    27   2.2  
SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc...    27   2.9  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    25   6.7  
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    25   8.8  

>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 208 TETYFRYRCLVYLRNIINISKTHADNQNYGTELN 107
           T  Y    C  Y+ +  N  K H  NQ YGTE++
Sbjct: 313 TGIYVLLLCCYYIFDTCNGQKNHFRNQIYGTEVH 346


>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 446 VNCYDYMAIHKLGGYGCKGDLP 511
           +N  DY+ ++  GGYGC  D P
Sbjct: 105 LNPSDYVIVYIPGGYGCSFDFP 126


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 290 PYWADAGKPTLNGQSPDAPDAYPNCANDPYCAATAVQNYMNKFGQDCNGD 439
           P+ +D  K T      DA   YP+ ++ PYC +    ++ + F  D + D
Sbjct: 141 PFSSDTLKKTYLSSENDA--RYPSVSDSPYCESEGFSSFEDDFEIDPDTD 188


>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 297

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 359 NCANDPYCAATAVQNYMNKFGQDCNGDGVVNCY 457
           NC  D YC   +V+ ++N     C G+G +  Y
Sbjct: 89  NCDCDQYCPKCSVELFLN---AKCTGEGTMEIY 118


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = -1

Query: 598 RQCVEMRDFLTTVSGDHGHAL 536
           R C+++RD+L+TV+ D+  +L
Sbjct: 399 RTCLQLRDYLSTVTYDNKDSL 419


>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 334

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 473 HKLGGYGCKGDLPFNYVNIF 532
           H  G  GC  D+PF Y  ++
Sbjct: 207 HSFGVIGCFNDVPFAYFEVY 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,510,916
Number of Sequences: 5004
Number of extensions: 50558
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)