Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_D16
(622 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0250 + 2052599-2053358,2053581-2053604,2054813-2054848,205... 32 0.42
01_01_0235 - 1964981-1964997,1965545-1966325 30 1.3
03_05_0877 + 28443481-28443538,28443641-28443911,28444028-284442... 29 2.3
07_03_0898 - 22403337-22404950 29 3.0
07_03_0896 + 22373348-22374946 29 3.0
02_05_0036 - 25292150-25293124,25294021-25294206,25294704-252948... 29 3.0
10_08_0351 - 17069974-17070232,17070470-17071751,17071908-170719... 29 3.9
01_01_0248 + 2041015-2041762,2042112-2042149 29 3.9
04_04_1396 + 33227126-33227846,33228530-33228637,33228825-33230029 28 5.2
01_01_0239 + 1983267-1984008,1984148-1984180,1984280-1985394 28 6.9
>01_01_0250 +
2052599-2053358,2053581-2053604,2054813-2054848,
2055047-2056284
Length = 685
Score = 31.9 bits (69), Expect = 0.42
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Frame = +2
Query: 161 DVPQVNQAPVTEVCLGCICQAVSGCKQGTKCEGDACGLFHITWPYW-ADAGKPTLNGQSP 337
D P + P CL A T C CG I +P+W D+ P + +P
Sbjct: 2 DTPLLLLLPFLAACLLAPRHAAEAAV--TSCAPRRCGNVTIAYPFWLPDSSPPPSSSSAP 59
Query: 338 DAPDAYP-NCAN 370
P A+ NC N
Sbjct: 60 CGPAAFQVNCDN 71
>01_01_0235 - 1964981-1964997,1965545-1966325
Length = 265
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +2
Query: 191 TEVCLGCICQAVSGCKQG-TKCEGDACGLFHITWPYWADAGKPTLNGQSPDAP-DAYPNC 364
T +CL + + C + +CE CG + +P+W G P N + +P A +C
Sbjct: 4 TLLCLPLLASLLLLCHRARAECEPATCGNLTVRYPFW--LGGPNFNQSNQSSPSSALASC 61
Query: 365 ANDPY 379
+ +
Sbjct: 62 GHPAF 66
>03_05_0877 +
28443481-28443538,28443641-28443911,28444028-28444242,
28444329-28445057,28445143-28445297,28445384-28445965
Length = 669
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 197 VCLGCICQAVSGCKQGTKCEGDACGL 274
+C GC+C G K G K +G G+
Sbjct: 17 LCSGCLCGVADGAKGGRKTKGPVIGI 42
>07_03_0898 - 22403337-22404950
Length = 537
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = -2
Query: 270 PQASPSHLVPCLQPDTAWQM-QPRHTSVTGAW 178
P SP PC P AW +P TSV W
Sbjct: 76 PSCSPGAASPCALPPGAWAWDRPAETSVVSEW 107
>07_03_0896 + 22373348-22374946
Length = 532
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = -2
Query: 270 PQASPSHLVPCLQPDTAWQM-QPRHTSVTGAW 178
P SP PC P AW +P TSV W
Sbjct: 77 PSCSPGAASPCALPPGAWAWDRPAETSVVSEW 108
>02_05_0036 -
25292150-25293124,25294021-25294206,25294704-25294874,
25295135-25295353,25295461-25295712,25295802-25295903,
25296487-25296684,25296762-25297046,25297640-25297709,
25297797-25297970,25298825-25298952,25299059-25299163,
25299686-25300030,25300361-25300563,25300964-25301045,
25301667-25301744
Length = 1190
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 195 KYVSVASARLCLAASKALSVKATLAVCSISHGR 293
K+VS A + +C A ++ ++A + VCS+ H R
Sbjct: 97 KFVSEAVSYICEAKLRSADIQAAVQVCSLLHQR 129
>10_08_0351 -
17069974-17070232,17070470-17071751,17071908-17071969,
17072109-17072181,17072399-17072466,17073023-17073207,
17073311-17073452,17073665-17073720,17074003-17074056,
17074679-17074782,17075012-17075112,17075717-17075790,
17076482-17076560,17076668-17076744,17076875-17076931,
17077058-17077168,17077254-17077334
Length = 954
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Frame = +2
Query: 371 DPYCAATAVQNYMNKFGQDCNGDGVV-------NCYDYMAIHKLGGYGCKG 502
D + A AV +YMN+F +D GDG++ YD +H + Y C G
Sbjct: 657 DVWPAVCAVMDYMNQFDRD--GDGLIENDGFPDQTYDAWTVHGISAY-CGG 704
>01_01_0248 + 2041015-2041762,2042112-2042149
Length = 261
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = +2
Query: 242 GTKCEGDACGLFHITWPYWADAGKPTLNGQSPDAPDAYPNCANDPYCAATAVQNYMN 412
G C ACG I +P+W +P G P C +DP ATA +N
Sbjct: 23 GESCAPAACGGLTIKYPFWLRGRQPAYCGH----PTFAVTCDDDP-TGATATPPSLN 74
>04_04_1396 + 33227126-33227846,33228530-33228637,33228825-33230029
Length = 677
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 353 YPNCANDPYCAATAVQNYMNKFGQDCNG 436
Y N A+ CAAT + + N G C+G
Sbjct: 78 YGNIADGSSCAATCIDGWQNFAGPSCSG 105
>01_01_0239 + 1983267-1984008,1984148-1984180,1984280-1985394
Length = 629
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/83 (22%), Positives = 30/83 (36%)
Frame = +2
Query: 221 AVSGCKQGTKCEGDACGLFHITWPYWADAGKPTLNGQSPDAPDAYPNCANDPYCAATAVQ 400
A +G C CG IT+P+W + QS P ++ ND
Sbjct: 20 AANGATVDPSCPPATCGNLTITYPFWLGS-----QNQSSCGPPSFQLTCNDRASGPFLRN 74
Query: 401 NYMNKFGQDCNGDGVVNCYDYMA 469
+Y+ G D +V + +A
Sbjct: 75 SYIKVLGFDYGRRSLVAVHALLA 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,766,455
Number of Sequences: 37544
Number of extensions: 353324
Number of successful extensions: 876
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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