Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_D16
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    25   0.60 
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    25   0.60 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   1.4  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   2.4  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   3.2  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   3.2  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   3.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.5  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   9.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.7  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +2

Query: 23  YYTPFFISIFNYYFIL 70
           Y+ P F+ I++Y+FI+
Sbjct: 225 YFVPLFLIIYSYWFII 240


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +2

Query: 23  YYTPFFISIFNYYFIL 70
           Y+ P F+ I++Y+FI+
Sbjct: 101 YFVPLFLIIYSYWFII 116


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 20  AYYTPFFISIFNYYFI 67
           ++Y P F+ +F YY I
Sbjct: 214 SFYLPLFVMVFTYYKI 229


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 242 LACSQTQPGRCNRD 201
           LAC  ++PG+C R+
Sbjct: 172 LACISSRPGQCGRE 185


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 197 VCLGCICQAVSG 232
           VCLG +CQ  +G
Sbjct: 8   VCLGIVCQGTTG 19


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 197 VCLGCICQAVSG 232
           VCLG +CQ  +G
Sbjct: 8   VCLGIVCQGTTG 19


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 197 VCLGCICQAVSG 232
           VCLG +CQ  +G
Sbjct: 8   VCLGIVCQGTTG 19


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 198 YVSVASARLCLAASKALSVKATLAVCSISHGRTG 299
           YV ++   LC   + AL ++ T  VC I     G
Sbjct: 696 YVLLSGILLCYLVTFALVLRPTDIVCGIQRFAAG 729


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 192 RKYVSVASARLCLAASKALSVKATLAVC 275
           R YVS  S+ + +    A S++  LA+C
Sbjct: 117 RAYVSEMSSYVSVLTIVAFSMERYLAIC 144


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/31 (29%), Positives = 12/31 (38%)
 Frame = -2

Query: 291 GHVIWNKPQASPSHLVPCLQPDTAWQMQPRH 199
           G + W K        +  L P  AWQ+   H
Sbjct: 85  GFLAWAKHNPRGKDALWSLVPHMAWQLSTAH 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,460
Number of Sequences: 438
Number of extensions: 3858
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)