Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_D14
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|...    93   2e-20
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe...    56   3e-09
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    28   0.80 
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    26   4.2  
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    26   4.2  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    25   5.6  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    25   7.4  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    25   9.8  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   9.8  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    25   9.8  

>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 93.5 bits (222), Expect = 2e-20
 Identities = 54/145 (37%), Positives = 81/145 (55%), Gaps = 3/145 (2%)
 Frame = +3

Query: 114 IKVGDMLPSLDLFEDSPANKVNTCEITAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKM 293
           + VG  LP + L+E+ P   V   E  +  K ++  VPGAFTP CS + +PGY+ N  + 
Sbjct: 2   VAVGSTLPKVTLWENKPEEVV---EFPSQGKFIIVGVPGAFTPPCS-SQVPGYIANEKQF 57

Query: 294 KSEGVSEIVCVSVNDPYVMAAWGAQHN--TNGKVRMLADPNGAFIKALDLGTNLPP-LGG 464
            ++G+S I  V+VND +V  AW    +      V  +AD NG F KA D G +    LG 
Sbjct: 58  AAKGISGIYVVAVNDVFVTKAWKKSFDGGEQSGVHFVADWNGEFTKAFDAGFDASGLLGP 117

Query: 465 FRSKRFSMVINDSKVEELNVEPDGT 539
            RSKR++ V+ + KV ++ +E + T
Sbjct: 118 LRSKRYAAVVENGKVVKVFIENEVT 142


>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 195

 Score = 56.4 bits (130), Expect = 3e-09
 Identities = 45/141 (31%), Positives = 70/141 (49%), Gaps = 2/141 (1%)
 Frame = +3

Query: 114 IKVGDMLPSLDLFEDSPANKVNTCEITAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKM 293
           I+VGD++P + L  D     +   +ITA K +V+FA P A TPGC+K    G+  N  K+
Sbjct: 46  IQVGDVIPDITL-PDEDGTSIRLRDITANKGLVIFAYPKASTPGCTKQGC-GFRDNYPKI 103

Query: 294 KSEGVSEIVCVSVNDPYVMAAWGAQHNTNGKVRMLADPNGAFIKALDLGTNLPPLGG-FR 470
           ++    E++ +S +      A+  +   N    +L+DP G  IK   LG   P  G  FR
Sbjct: 104 QASDY-EVLGLSFDTSKAQKAF--KDKQNFPYHLLSDPKGELIK--KLGAEKPGGGKLFR 158

Query: 471 SK-RFSMVINDSKVEELNVEP 530
           S   F        V+E+++ P
Sbjct: 159 SHWIFEKGTGKCIVKEIDISP 179


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 51  STFNNGVYVRALHTSKIAMAPIKVGDMLPSLDL 149
           STFN+G+ +RAL       AP+    +L   DL
Sbjct: 382 STFNSGISLRALRKEMGNTAPVSSNQLLKDADL 414


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -1

Query: 439 PRSRALMNAPFGSASIR-TFPLVLCWAPQAAITYGSFTDTHT 317
           P S   +NA    A    TFP+VL W    A  + SF D H+
Sbjct: 697 PGSVEAVNAVISIAKANPTFPIVLQWTGGRAGGHHSFEDFHS 738


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 410 IWISKHSYLSIGVVLGTPSGHNIRIVHRHAYYFRN 306
           I  S  S+ S+   L    G  IR +H H  +F+N
Sbjct: 9   IKFSSKSHYSVSCFLIATQGAKIRQIHTHNTFFKN 43


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 301 SLFILSAFCTYPGK*VLEHPGVNAPGTANKTTFFPAVISQVF 176
           S+F  +AF +Y G    E+ G+ A  T N    FP  + QVF
Sbjct: 274 SVFSTAAF-SYAGT---EYIGIAASETKNPAKAFPKAVKQVF 311


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 2/127 (1%)
 Frame = +3

Query: 48  ISTFNNGVYVRALHTSKIAMAPIKVGDMLPSLDLFEDSPANKVNTCEITAGKKVVLFAVP 227
           + +F+N  YV++ +    +++   + +++P   +  DS A    T  +T+  K      P
Sbjct: 305 VRSFSN--YVKSSNVVNPSLSQASL-EIIPRKSMKRDSNAQNDGTSTMTSKLK------P 355

Query: 228 GAFTPGCSKTHLPGYVQNADK--MKSEGVSEIVCVSVNDPYVMAAWGAQHNTNGKVRMLA 401
                       PG ++ A+K     E    I       P+    WGA+  +     +LA
Sbjct: 356 SVGLSNTRDAPKPGGLRRANKPCFNKETKGSIFSKENKGPFTCNPWGAKKVSPPPCEVLA 415

Query: 402 DPNGAFI 422
           D N A I
Sbjct: 416 DLNTASI 422


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
 Frame = +3

Query: 267 GYVQNADKMKSEGVSEIVCVSVNDPYVMAAWGAQH-----NTNGKVRMLAD 404
           GY+ +++ +  EG  + +   V++P   A W  +H     N    + +L D
Sbjct: 329 GYLHSSELLYPEGTEQQIISLVDEPNQNALWIIEHEHSQDNNRSNIELLKD 379


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 25/85 (29%), Positives = 33/85 (38%)
 Frame = +3

Query: 21  FTSISIVRGISTFNNGVYVRALHTSKIAMAPIKVGDMLPSLDLFEDSPANKVNTCEITAG 200
           FT  SI      +N    +R L   K           LP L +FE     K+ TC+    
Sbjct: 84  FTGFSITDLQEKWNKWDIIRVLEDFKALEDETIDFTSLPCL-IFETLLNPKLFTCKNIY- 141

Query: 201 KKVVLFAVPGAFTPGCSKTHLPGYV 275
            K  + A  G  +  CS   LPGY+
Sbjct: 142 -KNAIDAFNGLLSDWCSNIFLPGYL 165


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 468 RSKRFSMVINDSKVEELNVEP 530
           RS  F +++NDSK+ +  +EP
Sbjct: 597 RSVEFHLILNDSKLSKTILEP 617


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,452,520
Number of Sequences: 5004
Number of extensions: 53017
Number of successful extensions: 135
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)