Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_D14
(553 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048 134 6e-32
06_03_0811 + 24830496-24831194 130 5e-31
02_01_0691 - 5167260-5167937 122 1e-28
01_01_1148 - 9113728-9113835,9113952-9114035,9114831-9114992,911... 109 2e-24
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 46 2e-05
02_01_0390 - 2824585-2825307,2828206-2828460,2829006-2829107,282... 32 0.35
06_01_0861 + 6527279-6527582,6527619-6527719,6527817-6528042,652... 31 0.81
10_08_0906 - 21472490-21472732,21472947-21473271,21473351-214735... 30 1.1
11_06_0690 + 26303733-26306540 30 1.4
09_01_0128 + 1932721-1935181,1936099-1936256 29 1.9
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 29 1.9
05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885... 29 1.9
06_01_0671 - 4899611-4899829,4900870-4901448 29 2.5
05_06_0099 + 25572530-25573603,25574178-25574633,25575165-25575449 27 7.5
05_01_0135 + 908803-909059,913133-913187,913499-914047,914140-91... 27 7.5
08_01_0131 + 1050028-1050459,1051599-1051701,1052338-1052393,105... 27 10.0
05_02_0038 + 5890103-5890522,5891442-5891515,5891605-5891680,589... 27 10.0
02_01_0107 + 785993-786359,786773-787703,787807-787975,788472-78... 27 10.0
>01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048
Length = 162
Score = 134 bits (323), Expect = 6e-32
Identities = 68/148 (45%), Positives = 96/148 (64%), Gaps = 4/148 (2%)
Frame = +3
Query: 105 MAPIKVGDMLPS--LDLFE-DSPANKVNTCEITAGKKVVLFAVPGAFTPGCSKTHLPGYV 275
MAP+ VGD LP L F+ + +V+ + AGKKVVLF VPGAFTP CS H+PG++
Sbjct: 1 MAPVAVGDTLPDGQLGWFDGEDKLQQVSVHGLAAGKKVVLFGVPGAFTPTCSNQHVPGFI 60
Query: 276 QNADKMKSEGVSEIVCVSVNDPYVMAAWGAQHNTNGKVRMLADPNGAFIKALDLGTNLPP 455
A+++K++GV +I+ VSVNDP+VM AW + N V+ LAD G + KAL L +L
Sbjct: 61 NQAEQLKAKGVDDILLVSVNDPFVMKAWAKSYPENKHVKFLADGLGTYTKALGLELDLSE 120
Query: 456 LG-GFRSKRFSMVINDSKVEELNVEPDG 536
G G RS+RF+++ ++ KV N+E G
Sbjct: 121 KGLGIRSRRFALLADNLKVTVANIEEGG 148
>06_03_0811 + 24830496-24831194
Length = 232
Score = 130 bits (315), Expect = 5e-31
Identities = 70/160 (43%), Positives = 101/160 (63%), Gaps = 7/160 (4%)
Frame = +3
Query: 78 RALHTSKIAMAPIKVGDMLPSLDL-FEDSPANKVNTC---EITAGKKVVLFAVPGAFTPG 245
RA+ S A A I VGD LP L + DSP ++ T ++TAGKKVVLFAVPGAFTP
Sbjct: 59 RAVSASAPAAATIAVGDKLPDATLSYFDSPDGELKTVTVRDLTAGKKVVLFAVPGAFTPT 118
Query: 246 CSKTHLPGYVQNADKMKSEGVSEIVCVSVNDPYVMAAWGAQHNTNGKVRMLADPNGAFIK 425
C++ H+PG+V A +++++GV + CVSVND +VM AW +V +L+D NG +
Sbjct: 119 CTQKHVPGFVAKAGELRAKGVDAVACVSVNDAFVMRAWKESLGVGDEVLLLSDGNGELAR 178
Query: 426 ALDLGTNL--PPLG-GFRSKRFSMVINDSKVEELNVEPDG 536
A+ + +L P G G RS+R++++ D V+ LN+E G
Sbjct: 179 AMGVELDLSDKPAGLGVRSRRYALLAEDGVVKVLNLEEGG 218
>02_01_0691 - 5167260-5167937
Length = 225
Score = 122 bits (295), Expect = 1e-28
Identities = 70/180 (38%), Positives = 104/180 (57%), Gaps = 8/180 (4%)
Frame = +3
Query: 21 FTSISIVRGISTFNNGVYVRALHTSKIAMAPIKVGDMLPSLDLFEDSPAN----KVNTCE 188
F+S + G+ R+ ++ +A I VGD LP L PA+ V E
Sbjct: 32 FSSRPLATGVRAAGARAARRSAASASTVVATIAVGDKLPDATLSYFDPADGELKTVTVAE 91
Query: 189 ITAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKMKSEGVSEIVCVSVNDPYVMAAWGAQ 368
+TAG+K VLFAVPGAFTP CS+ HLPG+++ A ++ ++GV I CVSVND +VM AW
Sbjct: 92 LTAGRKAVLFAVPGAFTPTCSQKHLPGFIEKAGELHAKGVDAIACVSVNDAFVMRAWKES 151
Query: 369 HNT-NGKVRMLADPNGAFIKALDLGTNL--PPLG-GFRSKRFSMVINDSKVEELNVEPDG 536
+ V +L+D N +AL + +L P+G G RS+R++++ +D V+ LN+E G
Sbjct: 152 LGLGDADVLLLSDGNLELTRALGVEMDLSDKPMGLGVRSRRYALLADDGVVKVLNLEEGG 211
>01_01_1148 -
9113728-9113835,9113952-9114035,9114831-9114992,
9115120-9115224,9115584-9116216,9117412-9117496,
9118426-9118520,9119083-9119241,9119968-9119997,
9120100-9120306
Length = 555
Score = 109 bits (261), Expect = 2e-24
Identities = 50/115 (43%), Positives = 73/115 (63%), Gaps = 1/115 (0%)
Frame = +3
Query: 186 EITAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKMKSEGVSEIVCVSVNDPYVMAAWGA 365
+I GKKVV+F +PGA+T CS+ H+P Y N DK+K++GV ++CVSVNDPY + W
Sbjct: 66 DIFHGKKVVIFGLPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDPYALNGWAE 125
Query: 366 QHNTNGKVRMLADPNGAFIKALDLGTNL-PPLGGFRSKRFSMVINDSKVEELNVE 527
+ + D +G+F K+LDL +L L G RS R+S ++D K++ NVE
Sbjct: 126 KLQAKDAIEFYGDFDGSFHKSLDLEVDLSAALLGRRSHRWSAFVDDGKIKAFNVE 180
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 46.0 bits (104), Expect = 2e-05
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 5/120 (4%)
Frame = +3
Query: 93 SKIAMAPIKVGDMLPSLDLFEDSPANKVNTCEITAGKKVVLFAVPGAFTPGCSKTHLPGY 272
S +AM + +GD +P+L+L DS K+ + V+LF+ PG FTP C+ T L
Sbjct: 32 SFVAMPGLTIGDTVPNLEL--DSTHGKIRIHDFVGDTYVILFSHPGDFTPVCT-TELAAM 88
Query: 273 VQNADKMKSEGVSEIVCVSVNDPYVMAAWGAQ---HNTNGKVR--MLADPNGAFIKALDL 437
A + GV +++ +S +D W + +V ++ADP+ IK L++
Sbjct: 89 AGYAKEFDKRGV-KLLGISCDDVQSHKDWIKDIEAYKPGNRVTYPIMADPSREAIKQLNM 147
>02_01_0390 -
2824585-2825307,2828206-2828460,2829006-2829107,
2829386-2829598,2829688-2829897
Length = 500
Score = 31.9 bits (69), Expect = 0.35
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = -3
Query: 434 VKSFDECAIWISKHSYLSIGVVLGTPSGHNIRIVHRHAYYFRNALTFHLISVLHV-SRQM 258
++ FD +++ + +G V+G P+G+++ HR AY A T++ ++ V SR M
Sbjct: 417 LQGFDSWYSAAAENPHDLVGAVVGGPNGNDVFTDHRGAYMQTEACTYNTAPMVGVFSRLM 476
Query: 257 SLRTPR 240
L R
Sbjct: 477 ELERRR 482
>06_01_0861 +
6527279-6527582,6527619-6527719,6527817-6528042,
6528132-6528475,6528624-6528989,6529080-6529347,
6529479-6529696
Length = 608
Score = 30.7 bits (66), Expect = 0.81
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +3
Query: 219 AVPGAFTPGCSKTHLPGYVQNADKMKSEGVSEIVCVSVNDPYVMAAW-GAQHNTNGKVRM 395
A+ G P C H+ + K +S+ V V + YV+A W G+ H++
Sbjct: 140 ALDGTHIPACVPMHMQDRFRGRKKFQSQNVLAAVDFDLRFLYVLAGWEGSAHDSYVLQDA 199
Query: 396 LADPNG 413
L+ NG
Sbjct: 200 LSRTNG 205
>10_08_0906 -
21472490-21472732,21472947-21473271,21473351-21473598,
21473823-21474071
Length = 354
Score = 30.3 bits (65), Expect = 1.1
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = +3
Query: 243 GCSKTHLPGYVQNADKMKSEGVSEIVCVSVNDPYVMAAWGAQHNTNGKVRMLADPNGAFI 422
G T+ P +Q+ M S++V +++ V G Q +GK + PNGAFI
Sbjct: 208 GLRMTYYPPCLQSDKVMGISPHSDVVGLTLL-LQVNDVQGLQIKKDGKWLSVDAPNGAFI 266
Query: 423 KALDLGTNLPPL--GGFRSKRFSMVINDSK 506
+++G L L G FRS VIN +K
Sbjct: 267 --VNIGDTLEILSNGKFRSVEHRAVINPNK 294
>11_06_0690 + 26303733-26306540
Length = 935
Score = 29.9 bits (64), Expect = 1.4
Identities = 24/91 (26%), Positives = 37/91 (40%)
Frame = +3
Query: 108 APIKVGDMLPSLDLFEDSPANKVNTCEITAGKKVVLFAVPGAFTPGCSKTHLPGYVQNAD 287
+P + G + L SP V+ CE +A + AV GAFT + P +V A
Sbjct: 524 SPARRGAAVGKESLLPSSPVAVVSQCEDSAPETQSTLAVVGAFTRPVFWSPQPVFVPAAK 583
Query: 288 KMKSEGVSEIVCVSVNDPYVMAAWGAQHNTN 380
E + P + A G+QH ++
Sbjct: 584 DSPPESAA---ATEPPQPLLPATVGSQHESS 611
>09_01_0128 + 1932721-1935181,1936099-1936256
Length = 872
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 381 HWCCAGHPKRP*HTDRSQTRILFQKRPHFSSYQRFA 274
H C+G KR H D+ QT L + H ++R+A
Sbjct: 334 HPFCSGVDKRQKHIDQIQTNSLGMQEKHTDKFERYA 369
>06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +3
Query: 348 MAAWGAQHNTNGKVRMLADPNGAFIKALDLGTNLPPLGGFRSKRFSMVIN 497
+ AW N ++R+LAD G + L P GG R R +IN
Sbjct: 1801 LLAWTGNDVLNRRLRILADSKGYILDDTGLYLATPGSGGKRGGRSDAIIN 1850
>05_07_0328 +
29286109-29286120,29286982-29287146,29288427-29288589,
29288625-29288903,29289047-29289122,29289725-29289787,
29292116-29292164,29292413-29292504,29293017-29293068,
29293209-29293271,29293382-29293431,29293941-29294016,
29294444-29294656,29294763-29294869,29294966-29295074,
29295489-29295689,29295773-29296033,29296154-29296171,
29296287-29296397,29296755-29297030,29297108-29297382,
29297814-29298165,29298371-29298655,29298715-29299261,
29301658-29301781,29301871-29301946,29302062-29302136,
29302300-29302353,29302833-29302892,29302977-29303093,
29303228-29303361,29303480-29303682,29303879-29303976,
29304358-29304461,29304537-29304702,29304803-29304925,
29305047-29305129,29305217-29305358,29305523-29305549,
29305784-29305854,29305930-29306518
Length = 2046
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 384 KVRMLADPNGAFIKALDLGTNLPPLGGF 467
K+ + ADPNG++++ L+ NL P+ F
Sbjct: 526 KLNLQADPNGSYVEVLERYVNLGPIVDF 553
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 29.1 bits (62), Expect = 2.5
Identities = 20/75 (26%), Positives = 36/75 (48%)
Frame = +3
Query: 114 IKVGDMLPSLDLFEDSPANKVNTCEITAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKM 293
+ G P+ L D V+ + G+ VV++ P TPGC+K + + +K
Sbjct: 118 VSKGSAAPNFTL-RDQDGRAVSLSKFK-GRPVVVYFYPADETPGCTK-QACAFRDSYEKF 174
Query: 294 KSEGVSEIVCVSVND 338
K G +E++ +S +D
Sbjct: 175 KKAG-AEVIGISGDD 188
>05_06_0099 + 25572530-25573603,25574178-25574633,25575165-25575449
Length = 604
Score = 27.5 bits (58), Expect = 7.5
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 376 PMERYECLLIQMAHSSKLLTSERTCHR 456
P+E+ C+ + +AH + + S+R HR
Sbjct: 394 PLEKIICIALDIAHGLEYIHSQRVIHR 420
>05_01_0135 +
908803-909059,913133-913187,913499-914047,914140-914365,
914446-914906
Length = 515
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +3
Query: 219 AVPGAFTPGCSKTHLPGYVQNADKMKSEGVSEIVCVSVNDPYVMAAW-GAQHNTNGKVRM 395
A+ G P H+ + K ++ V V + YV+A W G+ H+++
Sbjct: 292 ALDGTHVPASVPAHMQDRFRGRKKSPTQNVLAAVDFDLRFIYVLAGWEGSAHDSHVLQDA 351
Query: 396 LADPNG 413
L+ P+G
Sbjct: 352 LSRPSG 357
>08_01_0131 +
1050028-1050459,1051599-1051701,1052338-1052393,
1052517-1052693,1052820-1052933,1053057-1053386
Length = 403
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +3
Query: 63 NGVYVRALHTSKIAMAPIKVGDMLPSLDLFEDSP 164
N ++ + ++ P K+GD+LP L +D P
Sbjct: 286 NSIHANKIEGIQVLWTPQKIGDILPEERLLKDYP 319
>05_02_0038 +
5890103-5890522,5891442-5891515,5891605-5891680,
5891892-5891959,5892189-5892312,5892714-5892812,
5893576-5893677,5893759-5893895,5894068-5894149,
5894668-5894730,5895680-5895727,5895833-5895895,
5896055-5896108,5896190-5896294
Length = 504
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = -1
Query: 529 GSTFNSSTLLSLITIEKRFERNPPNGGRFVPRSRALMNAPF--GSASIRTFPLVLCWAPQ 356
G F++ T + + ++ + +P + + L+ A F S+R +PL++C
Sbjct: 109 GGDFSAFTFRAAAPVHRKAKESPLSSDAIFKQYGLLIRAGFWFNDKSLRDWPLLMCCLSL 168
Query: 355 AAITYGSF 332
A G+F
Sbjct: 169 PAFPLGAF 176
>02_01_0107 +
785993-786359,786773-787703,787807-787975,788472-788588,
788815-788961
Length = 576
Score = 27.1 bits (57), Expect = 10.0
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -3
Query: 464 STQRWQVRSEVKSFDECAI--WISKHSYLSIGVVLGTPSGHNIRIVHR 327
S Q W +RS +S C + ++ L IG+ L P G IR +HR
Sbjct: 386 SEQSWALRSLSESTVACITSDYAMQNVILQIGLRLLAPGGMQIRQLHR 433
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,040,806
Number of Sequences: 37544
Number of extensions: 347618
Number of successful extensions: 851
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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