Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_D14
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016448-16|AAM45377.1|  394|Caenorhabditis elegans Atg (autopha...    29   1.7  
AF016448-15|AAB65961.1|  412|Caenorhabditis elegans Atg (autopha...    29   1.7  
Z81063-4|CAB02955.1|  209|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z78417-12|CAO78731.1|  318|Caenorhabditis elegans Hypothetical p...    27   9.0  
Z78417-11|CAE17739.1|  294|Caenorhabditis elegans Hypothetical p...    27   9.0  

>AF016448-16|AAM45377.1|  394|Caenorhabditis elegans Atg (autophagy)
           related protein18, isoform b protein.
          Length = 394

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
 Frame = +3

Query: 156 DSPANKVNTCEITAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKMKSEGVSE--IVCVS 329
           D+P NK+   ++T+     L A PG+   G    HL   + N   + +    E  I C+ 
Sbjct: 139 DTPTNKLGVLDLTSNPGNALIAYPGSTDTG--SVHLFDAI-NLSSVSTFNAHEGTIACLK 195

Query: 330 VNDPYVMAAWGAQHNTNGKVRMLADPNG 413
            N    M A  +   T   +R+ + PNG
Sbjct: 196 FNQEGNMIATASTKGT--VIRVYSVPNG 221


>AF016448-15|AAB65961.1|  412|Caenorhabditis elegans Atg (autophagy)
           related protein18, isoform a protein.
          Length = 412

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
 Frame = +3

Query: 156 DSPANKVNTCEITAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKMKSEGVSE--IVCVS 329
           D+P NK+   ++T+     L A PG+   G    HL   + N   + +    E  I C+ 
Sbjct: 139 DTPTNKLGVLDLTSNPGNALIAYPGSTDTG--SVHLFDAI-NLSSVSTFNAHEGTIACLK 195

Query: 330 VNDPYVMAAWGAQHNTNGKVRMLADPNG 413
            N    M A  +   T   +R+ + PNG
Sbjct: 196 FNQEGNMIATASTKGT--VIRVYSVPNG 221


>Z81063-4|CAB02955.1|  209|Caenorhabditis elegans Hypothetical
           protein F15D3.6 protein.
          Length = 209

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +3

Query: 159 SPANKVNTCEITAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKMKSEGVSEIV 320
           +PA++     I     +V   +P AF   C KT L  Y QNA+K + +GV  ++
Sbjct: 111 TPAHEDPNKTILKQDVIVTITLP-AFADYCEKTFLSIYSQNANKGR-QGVEWVI 162


>Z78417-12|CAO78731.1|  318|Caenorhabditis elegans Hypothetical
           protein C35C5.10b protein.
          Length = 318

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = -2

Query: 519 SIPLLCCH*LPLRNVSNGIHPTVAGSFRGQEL 424
           SIPL C   LP RNVS  +  TV     G EL
Sbjct: 76  SIPLDCSFTLPTRNVSRYVILTVYSLIFGAEL 107


>Z78417-11|CAE17739.1|  294|Caenorhabditis elegans Hypothetical
           protein C35C5.10a protein.
          Length = 294

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = -2

Query: 519 SIPLLCCH*LPLRNVSNGIHPTVAGSFRGQEL 424
           SIPL C   LP RNVS  +  TV     G EL
Sbjct: 52  SIPLDCSFTLPTRNVSRYVILTVYSLIFGAEL 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,702,559
Number of Sequences: 27780
Number of extensions: 301105
Number of successful extensions: 821
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)