Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_D14
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    24   0.89 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   0.89 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   0.89 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   0.89 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   2.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   4.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   6.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   8.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.3  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 358 QAAITYGSFTDTHTISETPSLFILSAF 278
           Q AITY    D  T+ ++PSL  L+A+
Sbjct: 211 QTAITYVWKNDEGTLRKSPSLTSLNAY 237


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 358 QAAITYGSFTDTHTISETPSLFILSAF 278
           Q AITY    D  T+ ++PSL  L+A+
Sbjct: 211 QTAITYVWKNDEGTLRKSPSLTSLNAY 237


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 358 QAAITYGSFTDTHTISETPSLFILSAF 278
           Q AITY    D  T+ ++PSL  L+A+
Sbjct: 262 QTAITYVWKNDEGTLRKSPSLTSLNAY 288


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 358 QAAITYGSFTDTHTISETPSLFILSAF 278
           Q AITY    D  T+ ++PSL  L+A+
Sbjct: 211 QTAITYVWKNDEGTLRKSPSLTSLNAY 237


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 18/81 (22%), Positives = 32/81 (39%)
 Frame = +3

Query: 168 NKVNTCEITAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKMKSEGVSEIVCVSVNDPYV 347
           N  ++ ++ +   V+ F +      GC   H P   QN D +     +  + +SV     
Sbjct: 304 NTQSSAKVMSKNGVLFFGLVNNSAIGCWNEHQPLQRQNMDMVAQNEKTLQMIISVKIIQN 363

Query: 348 MAAWGAQHNTNGKVRMLADPN 410
           +A  G  +  +    MLA  N
Sbjct: 364 LAYSGRMNRIHKNEYMLALSN 384


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 128 ISNLNRCHGYF*SVQRSYVDPVIECRNAA 42
           + NLNR HG+    Q      VI+  N A
Sbjct: 224 VRNLNRTHGFPNDAQPYIFQEVIDYGNEA 252


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 14/50 (28%), Positives = 18/50 (36%)
 Frame = -1

Query: 433 SRALMNAPFGSASIRTFPLVLCWAPQAAITYGSFTDTHTISETPSLFILS 284
           SR     P  S S+    L   W P      G  +  HTI+    L  +S
Sbjct: 96  SRLSFLGPIKSLSLSIKMLERIWRPDTYFYNGKHSYVHTITVPNKLLRIS 145


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 434 VKSFDECAIWISKHSYLSIGVVLGTPS 354
           VKS++     I  HS  S+G+ L  PS
Sbjct: 110 VKSYEIWVPDIVMHSVTSVGIDLEMPS 136


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -3

Query: 413 AIWISKHSYLSIGVVLGTPSGHNIRIV 333
           A+W +    L+ G+  GTP   + R++
Sbjct: 613 AVWFAWGVLLNSGIGEGTPRSFSARVL 639


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,171
Number of Sequences: 438
Number of extensions: 3526
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)