Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_D12
(625 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad... 37 1e-04
S73225-1|AAB30811.1| 327|Tribolium castaneum protein ( Triboliu... 31 0.010
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro... 25 0.39
EF222291-1|ABN79651.1| 374|Tribolium castaneum cardioactive pep... 23 2.7
AY074761-1|AAL71874.1| 314|Tribolium castaneum ultrabithorax pr... 22 3.6
EF125544-1|ABL73928.1| 279|Tribolium castaneum obstractor B pro... 22 4.8
AF025669-1|AAB81523.1| 243|Tribolium castaneum GABA receptor su... 21 8.4
>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
adhesion molecule splicevariant 3.12.3.1 protein.
Length = 1639
Score = 37.1 bits (82), Expect = 1e-04
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +3
Query: 390 LECKASARPPPRITWYK--DGRPVADIALRRFRVQNYRRRSVLVIRHARNEDSATYECRA 563
L C A P P WYK +G RV+ L+IR A+ EDS Y C
Sbjct: 252 LLCPAQGFPSPSFRWYKFVEGTTRKQAVTLNDRVKQVA--GTLIIREAKVEDSGKYLCVV 309
Query: 564 QGAVGPPAIAKANITVVSP 620
+VG ++ + +TV +P
Sbjct: 310 NNSVGGESV-ETVLTVTAP 327
Score = 37.1 bits (82), Expect = 1e-04
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Frame = +3
Query: 336 ARVEP-MQSVETARGTRARLECKASARPPPRITWYKDGRPVADIALRRFRVQNYRRRS-- 506
A++EP +Q+++ R A C P I+W KDG P+ D R+++ R+
Sbjct: 330 AKIEPQVQTIDFGRP--ATFTCNFEGNPIKTISWLKDGHPI-DHNEAVLRIESVRKEDKG 386
Query: 507 --VLVIRHARNEDSATYECRAQGAVGPPAIAKA-NITVVSP 620
IR+ + AT E + G PP I A N V P
Sbjct: 387 MYQCFIRNDQESAEATAELKLGGRFEPPQIRHAFNEETVQP 427
Score = 36.3 bits (80), Expect = 2e-04
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Frame = +3
Query: 369 ARGTRARLECKASARPPPRITWYKDGRPVADIALRRFRVQNYRRR---SVLVIRHARNED 539
A+G+ A +ECKA P P +TW K V+ + F+ N + L I + + +
Sbjct: 711 AQGSDAAVECKADGFPRPVVTW-KRATGVSPGDYKDFKPNNPDIKVEDGTLTINNIQKTN 769
Query: 540 SATYECRAQGAVGPPAIAKANITVVSP 620
Y C A +G A I+V +P
Sbjct: 770 EGYYLCEAVNGIGSGLSAVIQISVQAP 796
Score = 35.5 bits (78), Expect = 4e-04
Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 4/100 (4%)
Frame = +3
Query: 327 SSPARV-EPMQSVETARGTRARLECKASARPPPRITWYK-DGRPVADI-ALRRFRVQNYR 497
S P V EP ++ + T A +EC A P P I W + DG V D+ LR+
Sbjct: 21 SGPVFVREPPNRIDFSNTTGAVVECSAHGNPTPDIIWVRSDGTAVGDVPGLRQVLANGNL 80
Query: 498 RRSVLVIRHARNEDSA-TYECRAQGAVGPPAIAKANITVV 614
R E A Y C A+ +VG N+ V
Sbjct: 81 VFPPFRAEDYRQEVHAQVYVCLAKNSVGSVHSRDVNVRAV 120
Score = 34.3 bits (75), Expect = 8e-04
Identities = 21/93 (22%), Positives = 40/93 (43%)
Frame = +3
Query: 342 VEPMQSVETARGTRARLECKASARPPPRITWYKDGRPVADIALRRFRVQNYRRRSVLVIR 521
V M+ G + C + P + W +DGR + + R + + + ++++
Sbjct: 514 VRSMEKQAIVAGGTLIVHCPFAGHPVDSVVWERDGR---QLPINR-KQKVFINGTLIIEN 569
Query: 522 HARNEDSATYECRAQGAVGPPAIAKANITVVSP 620
R D ATY+C A+ + G A + V+ P
Sbjct: 570 VERASDQATYDCVAKNSQGYSARGSLEVQVMVP 602
Score = 33.5 bits (73), Expect = 0.001
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Frame = +3
Query: 321 GYSSPARVEPMQSVETAR-GTRARLECKASARPPPRITWYKDGRPVADI---ALRRFRVQ 488
G P ++ + ET + G L+C AS P P ITW GR +++ + ++
Sbjct: 409 GRFEPPQIRHAFNEETVQPGNSVFLKCIASGNPTPEITWELYGRRLSNSERNQIGQYVTV 468
Query: 489 NYRRRSVLVIRHARNEDSATYECRAQGAVG 578
N S L I D Y C A VG
Sbjct: 469 NGDVVSHLNITAIHTNDGGLYRCVASSKVG 498
Score = 29.5 bits (63), Expect = 0.024
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Frame = +3
Query: 300 IRAVYKPGYSSPARVE-PMQSVETARGTRARLECKASARPPPRITWYKDGRPVADIALRR 476
+ AV + +P + + +++ + RG A L+C+A P I W + + + R
Sbjct: 785 LSAVIQISVQAPPQFDIKLRNQTSRRGDPAVLQCEAKGEKPIGILWNINNKRLEPKGDNR 844
Query: 477 FRVQNYRRR----SVLVIRHARNEDSATYECRAQGAVG 578
+ ++ S L I+ DSA + C A A G
Sbjct: 845 YTIREEILANGVLSGLSIKRTERSDSALFTCVATNAFG 882
Score = 29.1 bits (62), Expect = 0.032
Identities = 26/107 (24%), Positives = 35/107 (32%), Gaps = 1/107 (0%)
Frame = +3
Query: 303 RAVYKPGYSSPARVEPMQSVETARGTR-ARLECKASARPPPRITWYKDGRPVADIALRRF 479
+ P S PA++ T L C A PPP ITW G V +
Sbjct: 1296 KVTVSPSASVPAKIASFDDTFTTTYKEDVTLPCLAVGLPPPVITWKIKG--VQFTTSDKI 1353
Query: 480 RVQNYRRRSVLVIRHARNEDSATYECRAQGAVGPPAIAKANITVVSP 620
R Q L IR ++ Y C + G ++ I P
Sbjct: 1354 RQQ---PDGSLFIRDVSRNNAGEYSCHVENDYGQDSVTHQLIVNAPP 1397
>S73225-1|AAB30811.1| 327|Tribolium castaneum protein ( Tribolium
castaneum homeodomainprotein mRNA, complete cds. ).
Length = 327
Score = 30.7 bits (66), Expect = 0.010
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +1
Query: 304 ERSTNPVTVVQPAWSQCSRWRQREGPGRGLSVKLAPGRRLASPGTRTAGPS 456
E+ T ++ PAW C+R+ R GR RR+ PG + P+
Sbjct: 180 EKKTESQPMLWPAWVYCTRYSDRPSSGRSPRT-----RRVKKPGAKQGAPT 225
>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
Length = 2700
Score = 25.4 bits (53), Expect = 0.39
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1
Query: 43 NAALVPNSCSPGIH 2
N LVP +C+PG+H
Sbjct: 1226 NGHLVPQNCAPGLH 1239
>EF222291-1|ABN79651.1| 374|Tribolium castaneum cardioactive
peptide receptor 1 protein.
Length = 374
Score = 22.6 bits (46), Expect = 2.7
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -1
Query: 97 FLTCTVAASGASDCTRASNAALVPNS 20
F+ T A +G+ + RAS+ L+P +
Sbjct: 220 FIKNTKAVNGSDNSRRASSRGLIPRA 245
>AY074761-1|AAL71874.1| 314|Tribolium castaneum ultrabithorax
protein.
Length = 314
Score = 22.2 bits (45), Expect = 3.6
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +2
Query: 356 VGGDSARDPGAA 391
VGGD A PGAA
Sbjct: 158 VGGDPASSPGAA 169
>EF125544-1|ABL73928.1| 279|Tribolium castaneum obstractor B
protein.
Length = 279
Score = 21.8 bits (44), Expect = 4.8
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -3
Query: 485 HPKSPQRDICDGPAVLVPGDARRRPG 408
HP+ D C V + GD RR G
Sbjct: 183 HPRYADPDDCQYFYVCINGDTPRRSG 208
>AF025669-1|AAB81523.1| 243|Tribolium castaneum GABA receptor
subunit protein.
Length = 243
Score = 21.0 bits (42), Expect = 8.4
Identities = 7/18 (38%), Positives = 15/18 (83%)
Frame = +3
Query: 456 ADIALRRFRVQNYRRRSV 509
++++L +F+V +RRR+V
Sbjct: 210 SEVSLPQFKVLGHRRRAV 227
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,735
Number of Sequences: 336
Number of extensions: 3089
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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