Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_D12
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    28   1.3  
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    26   5.1  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    25   8.9  

>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +1

Query: 310 STNPVTVVQPAWSQCSRWRQREGPGRGLSVKLAPGRRLASPGTRTAGPSQIS 465
           S NPVT +Q  +SQ S  RQ    GRG +V        ++ G+ T G +  S
Sbjct: 203 SRNPVTRLQRIFSQNSVSRQNSRTGRGAAVANTEETN-STGGSETGGAANSS 253


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 19/78 (24%), Positives = 30/78 (38%)
 Frame = -3

Query: 353 HWLHAGWTTVTGFVDRSDPLKQLPGPLERRTEGDGRMAPPLREHDIVPSIF*RHFETSGA 174
           +W  A   T   F D S P+     P+     G   ++ P   H +  S F   F +   
Sbjct: 34  YWTKAIAYTTWNFFD-SSPVTPQRNPISLFVRG---LSHPFLRHRLSKSQFNEWFLSHNG 89

Query: 173 IEPIVGQLQPDDRVLTRP 120
           ++P+  Q  PD  +   P
Sbjct: 90  VDPVQAQTLPDPLLFDIP 107


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 497 SVILHPKSPQRDICDGPAVLVPGDARRRPGASFTLK 390
           S IL P S  +D+ D    L       +PG+S TLK
Sbjct: 217 SDILIPASAMKDLKDRKNALAKEFEESQPGSSLTLK 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,348,031
Number of Sequences: 5004
Number of extensions: 45776
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)