Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_D12
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1462 - 33769122-33769151,33769385-33769426,33769571-337701... 29 3.0
03_01_0245 + 1916718-1917443,1917534-1917719 29 4.0
02_03_0006 - 13868590-13869593,13869887-13870156,13870487-13871090 29 4.0
12_02_1271 + 27472457-27473030,27473122-27473197,27473277-274733... 28 5.2
02_05_0868 + 32342967-32343915,32344389-32344447 28 5.2
08_01_0527 + 4580599-4580818,4580933-4581806,4581891-4581955,458... 28 6.9
06_03_0958 - 26310106-26310783,26312176-26312332,26312447-26312781 28 6.9
04_04_0783 - 28040828-28041615,28041942-28043589 28 6.9
02_02_0499 + 10989645-10989929,10990303-10990395,10990952-109910... 28 6.9
11_08_0023 + 27741775-27742475,27744163-27744413,27744557-277447... 27 9.2
11_04_0050 - 12819929-12820468,12820606-12820824,12820900-12821118 27 9.2
11_01_0763 + 6402901-6403971,6404581-6404826 27 9.2
10_08_0884 - 21283761-21283877,21283965-21284016,21284119-212841... 27 9.2
06_03_1507 - 30646168-30646254,30646350-30646490,30648109-306482... 27 9.2
06_03_0942 - 26185898-26185932,26186004-26186379,26186473-261866... 27 9.2
06_01_0384 - 2758250-2758312,2758349-2758837,2760490-2761119 27 9.2
04_01_0363 + 4754650-4755912 27 9.2
01_06_1178 + 35149700-35150238,35151064-35151385,35151787-35152038 27 9.2
>04_04_1462 -
33769122-33769151,33769385-33769426,33769571-33770158,
33770398-33770508,33770585-33770625,33771238-33771382,
33771578-33771781,33772626-33772769,33772991-33773183,
33774559-33774602,33774694-33774822,33774907-33774954,
33775058-33775120,33775198-33775236,33776694-33776767,
33777460-33777518,33777709-33777768,33777920-33778044,
33778693-33778751,33779418-33779511,33779572-33779625,
33779775-33779813,33780423-33780602
Length = 854
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 306 AVYKPGYSSPARVEPMQSVETARGTRARLECKASARPPPRITWYKDGRPVADIALRRFRV 485
AV + S P E + RG RA KAS +P P ++ + R + D+ L F V
Sbjct: 15 AVAEEDSSKPEAAEAKKPAARGRGKRA----KASPKPKPETEYFPEKRNLEDLWLSAFPV 70
>03_01_0245 + 1916718-1917443,1917534-1917719
Length = 303
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +1
Query: 1 SGSPGCRNSARGQRSKRACSRWRRTP-PPC--KSRKSCGLKA 117
SG G N+ RG+ S +R RTP PC +R+ CG+++
Sbjct: 72 SGGGGGDNNLRGRSSTTTSARTPRTPKTPCTPTARRLCGVRS 113
>02_03_0006 - 13868590-13869593,13869887-13870156,13870487-13871090
Length = 625
Score = 28.7 bits (61), Expect = 4.0
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Frame = -3
Query: 302 DPLKQLPGPLERRTEGDGRMAPPLREHDIVPSIF*RHFETSGAIEPI-VGQLQ-----PD 141
+P+ +LPG E G + PP+R+HD P R + G PI +G L+ D
Sbjct: 396 EPIGELPGSAEPTPLGP--VQPPVRQHDPSPLAMLRRPKFGGIRLPIELGLLKARSLFQD 453
Query: 140 DRVLTRPPA 114
D PPA
Sbjct: 454 DEKAAPPPA 462
>12_02_1271 +
27472457-27473030,27473122-27473197,27473277-27473392,
27473840-27474354
Length = 426
Score = 28.3 bits (60), Expect = 5.2
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = +3
Query: 405 SARPPPRITWYKDGRPVADIALRRFRVQNYRRRSVLVIR-HARNEDSATYECRAQGAVGP 581
S PPR + G ALRR + Y R++ ++ A DS A A P
Sbjct: 69 STASPPRFAYLISGSAGDAAALRRVLLALYHPRNLYILHLDAEAPDSDRANLAADLADHP 128
Query: 582 PAIAKANITVVSPA 623
A AN+ V+ A
Sbjct: 129 VIAAAANVHVIQRA 142
>02_05_0868 + 32342967-32343915,32344389-32344447
Length = 335
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 449 PAVLVPGDARRRPGASFTLKPRPGPSR 369
PA VPG A R+PG + P P P R
Sbjct: 101 PAPAVPGRAFRQPGPAPAPSPAPAPPR 127
>08_01_0527 +
4580599-4580818,4580933-4581806,4581891-4581955,
4582055-4582110,4582955-4583058,4583310-4583382,
4583474-4583654,4584537-4584622
Length = 552
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/62 (25%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = -3
Query: 311 DRSDPLKQLPGPLERRTEGDGRMAPPLR-EHDIVP-SIF*RHFETSGAIEPIVGQLQPDD 138
D +P +LP PL+R+ GDG ++PP + ++ P + T+ ++ + +++ D+
Sbjct: 304 DSHEPKDKLP-PLKRQALGDGDISPPRKGRKEVAPKEVRKAGLMTAEEVKEDIRKIKEDE 362
Query: 137 RV 132
R+
Sbjct: 363 RL 364
>06_03_0958 - 26310106-26310783,26312176-26312332,26312447-26312781
Length = 389
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/68 (25%), Positives = 25/68 (36%)
Frame = -1
Query: 439 LYQVMRGGGRALALHSSRARVPRAVSTDCIGSTRAGXXXXXXXXXXXXLSNFPVLLSGGP 260
L+ + GG A ++ + T + S+ A + P LL GG
Sbjct: 121 LWLAVAGGTERPAAAAAGVNAAPGIMTFLVASS-ANNASWETNSTSLEGKDSPALLGGGE 179
Query: 259 RATAEWPR 236
A A WPR
Sbjct: 180 HALARWPR 187
>04_04_0783 - 28040828-28041615,28041942-28043589
Length = 811
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 264 PPLKRTGKLLKRIRAVYKP-GYSSPARVEPMQSVETARGT 380
PP +LK +R +Y+P G P +P+QSV T GT
Sbjct: 536 PPTDAVSSVLKILRGIYEPQGIEVP---DPLQSVCTRWGT 572
>02_02_0499 +
10989645-10989929,10990303-10990395,10990952-10991066,
10991187-10991297,10991701-10991783,10991872-10991929,
10992490-10992569
Length = 274
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -3
Query: 464 DICDG-PAVLVPGDARRRPGASFTLK 390
++ DG P V P D +RRPGA F L+
Sbjct: 59 EVADGLPVVPRPVDGKRRPGAIFVLE 84
>11_08_0023 +
27741775-27742475,27744163-27744413,27744557-27744715,
27744976-27745409,27745537-27746076
Length = 694
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 109 VRRTFLTCTVAASGASDCTRASNAALVPNSCSPG 8
+R T +C+V S SDC A+N CS G
Sbjct: 270 IRGTNRSCSVCVSDQSDCANATNGDGYLCKCSEG 303
>11_04_0050 - 12819929-12820468,12820606-12820824,12820900-12821118
Length = 325
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +1
Query: 19 RNSARGQRSKRACSRWRRTPPPCKSRKSCGLK 114
R+ G ++R C W+ P C+ K C K
Sbjct: 277 RSERGGHGNRRRCCSWKIKLPKCRFPKCCAFK 308
>11_01_0763 + 6402901-6403971,6404581-6404826
Length = 438
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +1
Query: 334 QPAWSQCSRWRQREGPGRGL---SVKLAPGRRLASPGTRTAGPSQ 459
+P W + RWR+R RG + +L G + G+R G Q
Sbjct: 110 RPWWQRAERWRRRRREARGRLRPAARLVKGNGGGASGSRGCGLRQ 154
>10_08_0884 -
21283761-21283877,21283965-21284016,21284119-21284187,
21284475-21284587,21284694-21284753,21284834-21285136
Length = 237
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 449 PAVLVPGDARRRPGASFTLKPRPGPSR 369
PA L+P ARRR G F+L G +R
Sbjct: 59 PAALLPNAARRRDGCGFSLGVDLGEAR 85
>06_03_1507 -
30646168-30646254,30646350-30646490,30648109-30648202,
30648445-30648509,30648934-30649176,30649442-30649499,
30649957-30650037,30650323-30650533,30650975-30651141,
30651216-30651268,30651600-30651681,30651765-30651914,
30652027-30652111,30652189-30652393,30652502-30652573,
30652911-30653456
Length = 779
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +1
Query: 295 RGSERSTNPVTVVQPAWSQCSRWRQREGPGRGLSVKLAPGRRLASPGTRTAGPSQISR 468
+GS+ ST + + S R + E PG A G + A PG +T +I+R
Sbjct: 296 KGSQNSTRTSKIGRNPTSSARR-SKNESPGSKYCNSSARGSKNAFPGVKTTSTGRITR 352
>06_03_0942 -
26185898-26185932,26186004-26186379,26186473-26186614,
26186694-26186820,26186870-26186927,26187520-26187551,
26187848-26188454
Length = 458
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -3
Query: 455 DGPAVLVPGDARRRPGASFTLKPRPGPSR 369
D VLVPG + R G + KP P P R
Sbjct: 22 DARPVLVPGGNKARSGPAAARKPSPKPLR 50
>06_01_0384 - 2758250-2758312,2758349-2758837,2760490-2761119
Length = 393
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +3
Query: 12 GLQEFGTR--AAFEARVQSLAPDAATVQVKKVLRTQGRWPR 128
GLQ G R ++ EA V + A + V TQGRWPR
Sbjct: 18 GLQGAGIRGNSSLEAAVVAEVSSAIQKLLVWVYNTQGRWPR 58
>04_01_0363 + 4754650-4755912
Length = 420
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 467 RDICDGPAVLVPGDARRRPGASFTLKPRPGPSR 369
RD GP + D RPGA T++ RPG +R
Sbjct: 35 RDHVGGPPPVHGIDGPDRPGADRTVRRRPGSAR 67
>01_06_1178 + 35149700-35150238,35151064-35151385,35151787-35152038
Length = 370
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 303 RAVYKPGYSSPARVEPMQSVETARGTRA 386
RA +P +PAR P + TARG R+
Sbjct: 6 RAPRRPRVRAPARAPPPTPIRTARGARS 33
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,723,030
Number of Sequences: 37544
Number of extensions: 433887
Number of successful extensions: 1702
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1702
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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