Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_D11
         (528 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    23   1.7  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   6.7  
EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    21   8.9  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    21   8.9  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    21   8.9  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    21   8.9  

>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -1

Query: 354 IFNFTITHFEGWI---PTYTLAPLAFSRWILSM*TTNFLRY 241
           +F+F +T F  WI     Y ++ ++ + + L   +T  L+Y
Sbjct: 38  VFSFAVTFFSAWICALVNYNVSEISENFYYLPAMSTGPLKY 78


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 374  LFYGLYSSLTSQSHTLKGGYRRTHWLHW 291
            LF+GL   + +Q+  L  G  +   +HW
Sbjct: 1328 LFFGLNFLIITQAMFLVVGQLQASQIHW 1355


>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 421 VFTKSR*PATSSAIQDCFTVFIHL*LHN 338
           V+ KS      S  +DC+ +F    LHN
Sbjct: 56  VYDKSIFAKLDSICEDCYMLFREPQLHN 83


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
           peptide isoform B protein.
          Length = 120

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 421 VFTKSR*PATSSAIQDCFTVFIHL*LHN 338
           V+ KS      S  +DC+ +F    LHN
Sbjct: 56  VYDKSIFAKLDSICEDCYMLFREPQLHN 83


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 421 VFTKSR*PATSSAIQDCFTVFIHL*LHN 338
           V+ KS      S  +DC+ +F    LHN
Sbjct: 56  VYDKSIFAKLDSICEDCYMLFREPQLHN 83


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 69  RGISVPLLTSDEYLCQHHSPKS*DKSS 149
           R ++VP+L  D   C    PK  D  S
Sbjct: 117 RRVAVPVLVRDGKPCLSGGPKHPDPGS 143


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,319
Number of Sequences: 336
Number of extensions: 2316
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12782794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)