Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_D11
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...   132   3e-32
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    27   1.3  
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc...    26   3.0  
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    26   4.0  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   5.3  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   7.0  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score =  132 bits (319), Expect = 3e-32
 Identities = 64/122 (52%), Positives = 87/122 (71%)
 Frame = +2

Query: 23  MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDDEVQVVRG 202
           MK+++ VTSSRRK RK HF APS +RRVLMSAPLSKELR+++ ++S+P+R+DD++ V+RG
Sbjct: 1   MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIRG 60

Query: 203 HXXXXXXXXXXXXXXXXFVVYIERIQREKANGASVYVGIHPSKCVIVKLKMNKDRKTILD 382
                            F++ IER+ REKANGAS  VGI  SK VI KL ++KDRK ++ 
Sbjct: 61  -SNKGREGKITSVYRKKFLLLIERVTREKANGASAPVGIDASKVVITKLHLDKDRKDLIV 119

Query: 383 RR 388
           R+
Sbjct: 120 RK 121


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 10   KKRQNEVQ*ARDVVQKEKQEEAFQCPFSHPTSTYVSTTLQRVKTKVQRE 156
            ++R    Q A++  ++ ++EE  +    HP+ TY  TT    K + +RE
Sbjct: 957  EERMLAAQRAKEEERERREEEERENDEDHPSRTYKRTTKSITKRQQRRE 1005


>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +1

Query: 4   RGKKRQNEVQ*ARDVVQKEKQEEAFQCPFSHPTSTYVSTTLQRVKTKV 147
           +G  R+N  Q A+     E  ++AF+  + H  ++ V  TL++ K+ V
Sbjct: 293 QGSFRKNVRQLAQTAKTYEDLKKAFEIEYKHSDASSVCPTLEKEKSLV 340


>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = -2

Query: 389 LCDPGLFYGLYSSLTSQSHTLKGGYRRTHWLHWLSHAGSFRCRLQTSYGTPVLLC 225
           LC+ G+F+GLYS +      L G    T  L + S+  + R  L ++Y  P  LC
Sbjct: 63  LCEEGVFHGLYSGVCPM---LIGSLPATA-LFFSSYEYTKR-HLMSNYNLPETLC 112


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 319  DTDVHTGSIGFLTLDPFDVDYKLLTV 242
            DT ++  SIG LT  P +++ KLLT+
Sbjct: 1051 DTLLYAKSIGLLTFLPNELNQKLLTL 1076


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +1

Query: 85  PFSHPTSTYVSTTLQRVKTKVQR-EIYANPQRRRSAGCTRTL*RPAGGQSSTGVP 246
           P   PTST  ST++    T     +  ++P    S  CT +   P GG SS   P
Sbjct: 193 PTVPPTSTS-STSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTP 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,929,493
Number of Sequences: 5004
Number of extensions: 36351
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)