Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_D11
(528 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0323 - 2459854-2460306 159 1e-39
01_01_0263 + 2136858-2137331 158 3e-39
11_01_0317 - 2365493-2365786,2365825-2365953 124 4e-29
05_01_0227 - 1684597-1684727,1685003-1685100,1685176-1685270,168... 29 3.1
02_05_0671 - 30769631-30769803,30770535-30770873,30770952-307710... 28 5.3
01_06_1091 + 34464923-34465026,34465124-34465163,34465245-344653... 28 5.3
05_01_0201 - 1441063-1443836,1444658-1445758,1446367-1447179,144... 27 9.3
>12_01_0323 - 2459854-2460306
Length = 150
Score = 159 bits (387), Expect = 1e-39
Identities = 84/137 (61%), Positives = 100/137 (72%)
Frame = +2
Query: 23 MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDDEVQVVRG 202
MK N VTSSRRK RK HF+APS +RRVLMSA LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRG 60
Query: 203 HXXXXXXXXXXXXXXXXFVVYIERIQREKANGASVYVGIHPSKCVIVKLKMNKDRKTILD 382
+V+++ERI REK NG++V VGIHPSK V+ KLK++KDRK ILD
Sbjct: 61 -SYKGREGKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILD 119
Query: 383 RRASGRLAALGKDKGKY 433
R+ASGR A K KGK+
Sbjct: 120 RKASGR--AADKAKGKF 134
>01_01_0263 + 2136858-2137331
Length = 157
Score = 158 bits (383), Expect = 3e-39
Identities = 83/137 (60%), Positives = 99/137 (72%)
Frame = +2
Query: 23 MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDDEVQVVRG 202
MK N VTSSRRK RK HF+APS +RRVLMSA LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRG 60
Query: 203 HXXXXXXXXXXXXXXXXFVVYIERIQREKANGASVYVGIHPSKCVIVKLKMNKDRKTILD 382
+V+++ERI REK NG++V VGIHPSK V+ KLK++KDRK ILD
Sbjct: 61 -SYKGREGKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILD 119
Query: 383 RRASGRLAALGKDKGKY 433
R+A GR A K KGK+
Sbjct: 120 RKARGR--AADKAKGKF 134
>11_01_0317 - 2365493-2365786,2365825-2365953
Length = 140
Score = 124 bits (299), Expect = 4e-29
Identities = 76/139 (54%), Positives = 91/139 (65%), Gaps = 2/139 (1%)
Frame = +2
Query: 23 MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVK--SMPIRKDDEVQVV 196
MK N VTSSRRK RK HF+APS +RRVLMSA LS ELR K+NV S R+ VQV
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVVRGSYKGREGKVVQVY 60
Query: 197 RGHXXXXXXXXXXXXXXXXFVVYIERIQREKANGASVYVGIHPSKCVIVKLKMNKDRKTI 376
R +V+++ERI REK NG++V VGIHPSK V+ KLK++KDRK I
Sbjct: 61 RRR----------------WVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAI 104
Query: 377 LDRRASGRLAALGKDKGKY 433
LDR+ASGR A K KGK+
Sbjct: 105 LDRKASGR--AADKAKGKF 121
>05_01_0227 -
1684597-1684727,1685003-1685100,1685176-1685270,
1685360-1685545,1686185-1686298,1686583-1686684,
1686811-1687096,1687242-1687291,1687351-1687479,
1687590-1687724,1688163-1688165
Length = 442
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 16 RQNEVQ*ARDVVQKEKQEEAFQCPFSHPTSTYVSTTLQRVKT 141
+ + VQ +RD QK E + Q S S Y+++T++ VKT
Sbjct: 268 KDSTVQPSRDAKQKPGPEASIQDLASRAASRYMASTVKSVKT 309
>02_05_0671 -
30769631-30769803,30770535-30770873,30770952-30771036,
30771229-30771369,30771802-30771873,30772183-30772302,
30772606-30772677,30772758-30772895,30773249-30773320,
30773609-30773685,30773761-30773837,30773960-30774077,
30774852-30774930
Length = 520
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 419 LYQEPLACH*LCDPGLFYGLYSSLTSQSHTLKGGY 315
L +E + C CDPGL G+ S S S++ Y
Sbjct: 393 LVEELIGCLLKCDPGLSCGIVKSFISPSNSCPSHY 427
>01_06_1091 +
34464923-34465026,34465124-34465163,34465245-34465328,
34465457-34465480,34465582-34465655,34465726-34465812,
34465922-34466006,34466215-34466261,34467048-34467113,
34468307-34468397,34468477-34468548
Length = 257
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 386 CDPGLFYGLYSSLTSQSHTLKGGYRRTHWLHWLSHAG 276
C G+ G+ +TS+ L+G RR H +HW H+G
Sbjct: 42 CKDGIVLGVEKLVTSKM-MLEGSNRRIHSVHW--HSG 75
>05_01_0201 -
1441063-1443836,1444658-1445758,1446367-1447179,
1447386-1447440
Length = 1580
Score = 27.1 bits (57), Expect = 9.3
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +3
Query: 51 PEGKTGRGISVPLLTSDEYLCQH--HSPKS*DKSST*NLCQSAKTTKCRLYEDIIKASR 221
P GKTG GI V + +E CQ ++ K+ S S + K L + II A+R
Sbjct: 485 PCGKTGSGIDVDIEQREENPCQETFNAMKADGSSDLATRPCSYREVKYNLMDQIIAANR 543
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,821,526
Number of Sequences: 37544
Number of extensions: 250090
Number of successful extensions: 642
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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