Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_D10
         (533 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    23   2.2  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   6.8  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   6.8  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   9.0  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   9.0  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   9.0  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -3

Query: 411 GLRDNGIDTGSGDNRGRASLVDVQNDLHERSAVSN 307
           G R       +GD  G  S VD QN+  E S   N
Sbjct: 74  GKRSKRSKRPNGDTNGDTSQVDDQNESLEASVNEN 108


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 57  HGSEGQEEFHSFSSSLPSC 1
           + SEGQ+  +  S+S P C
Sbjct: 79  YSSEGQQNSNYSSNSKPDC 97


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 286 DSPPLAPVADSTPLVQIILNINQASSAPIVPGPG 387
           +SPP AP + +TP+    +    A+  P     G
Sbjct: 9   ESPPPAPQSAATPISSSGMTSPAAAPPPATTSSG 42


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 469 PVPKPVQVADITPVAPKPVIV 531
           P P+P +V+   P  P+P  V
Sbjct: 253 PKPRPTKVSRRKPRPPRPTQV 273


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 173 SSMMAGPTAIGTKSSMMGAG 114
           + +M  PT  G++ S  GAG
Sbjct: 83  TQLMPSPTVSGSEMSSPGAG 102


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 173 SSMMAGPTAIGTKSSMMGAG 114
           + +M  PT  G++ S  GAG
Sbjct: 83  TQLMPSPTVSGSEMSSPGAG 102


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,150
Number of Sequences: 336
Number of extensions: 1942
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12992348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)