Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_D10
(533 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 30 0.25
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 28 0.76
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 28 1.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.0
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.8
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 1.8
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 27 2.3
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 26 3.1
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 3.1
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 25 7.1
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 7.1
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 7.1
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 25 7.1
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 7.1
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 25 7.1
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 25 7.1
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.1
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 9.4
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 25 9.4
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 29.9 bits (64), Expect = 0.25
Identities = 25/89 (28%), Positives = 34/89 (38%)
Frame = +1
Query: 118 APIIDDFVPIAVGPAIIDEFEPISVGPAIVNEFEPISVGPAIVDEFVPISVGPAIVDSPP 297
AP++ + + PA+ E +SV V P V P+ V PP
Sbjct: 550 APVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAP-EVPSVPQPPVAPVVPEAPSVPQPP 608
Query: 298 LAPVADSTPLVQIILNINQASSAPIVPGP 384
+APVA P V + AP VP P
Sbjct: 609 VAPVAPEVPSVPQRPAVPVVPEAPSVPQP 637
Score = 29.5 bits (63), Expect = 0.33
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Frame = +1
Query: 100 PGVAGP--APIIDDFVPIAVGPA--IIDEFEPISVGPAI--VNEFEPISVGPA--IVDEF 255
P V P AP++ + + P + E + PA+ V E + PA +V E
Sbjct: 587 PSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEV 646
Query: 256 VPISVGPAI--VDSPPLAPVADSTPLVQIILNINQASSAPIVPGPG 387
+ PA+ V P P + P+V + ++ Q + P+VP G
Sbjct: 647 PSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVPVVPEAG 692
Score = 26.6 bits (56), Expect = 2.3
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +1
Query: 196 PAIVNEFEPISVGPAIVDEFVPISVGPAIVDSP--PLAPVADSTPLVQIILNINQASSAP 369
P+++ P +V E + PA +P P AP + P+V ++ Q + P
Sbjct: 507 PSVITPSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVP 566
Query: 370 IVP 378
+VP
Sbjct: 567 VVP 569
Score = 26.6 bits (56), Expect = 2.3
Identities = 27/97 (27%), Positives = 35/97 (36%), Gaps = 2/97 (2%)
Frame = +1
Query: 100 PGVAGPAPIIDDFVPIAVGPAIIDEFEPISVGPA--IVNEFEPISVGPAIVDEFVPISVG 273
P VA AP + V P ++ E + P + E + PA VP+
Sbjct: 577 PPVAPVAPEVPSVPQPPVAP-VVPEAPSVPQPPVAPVAPEVPSVPQRPA-----VPVVPE 630
Query: 274 PAIVDSPPLAPVADSTPLVQIILNINQASSAPIVPGP 384
V PP APV P V + AP VP P
Sbjct: 631 APSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQP 667
Score = 26.2 bits (55), Expect = 3.1
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
Frame = +1
Query: 97 SPGVAGPAPIIDDFVPIAVGPAIIDEFEPISVGPAIVNEFEPISVGPAIVDE-FVPISVG 273
+P A P + + + PA+ F + A +P + P++ P+
Sbjct: 466 NPISAPEKPTSGESLSLNPPPAMPKVFPERDISSASQKAAQPSVITPSVPQPPAAPVVPE 525
Query: 274 PAIVDSPPLAPVADSTPLVQIILNINQASSAPIVP 378
V PP APVA P + Q +AP+VP
Sbjct: 526 APSVHQPPAAPVAPEVP------SAPQRPAAPVVP 554
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 28.3 bits (60), Expect = 0.76
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -1
Query: 272 PTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAIGTKSSMMGAGPATP 102
P+ +G+N + P GSN T A + + +S +G +SM P TP
Sbjct: 140 PSSLGSNHQFITTPPVNGSNEPTSAQTNHIITANSSPSGNAGSNASASMSVPPPLTP 196
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 27.9 bits (59), Expect = 1.0
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -3
Query: 360 ASLVDVQNDLHERSAVSNGGKRRAVYDSGSN-GDRYELVDDGRPNGDRFE 214
A+ D+QN S+ G Y SG+ GDR +DDG + FE
Sbjct: 90 AAYKDIQNTQKSLVTQSSTGSANVAYISGNGPGDR-SFIDDGNYSASSFE 138
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 1.0
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = -1
Query: 332 CTRGVLSATGARGGLSTIAGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGP 153
CT TG LST PT T++S+ + P S S T + + + S+
Sbjct: 229 CTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTS 288
Query: 152 TAI-GTKSSMMGAGPATP 102
T+I T +S P P
Sbjct: 289 TSIPPTGNSTTPVTPTVP 306
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 1.8
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = -1
Query: 314 SATGARGGLSTIAGPTEIGTNSSTMAGPTEIGSNSLTMAGPTE---MGSNSSMMAGPTAI 144
S+T LST + P+ ++SST + + S+S + + + S+SS + PT+
Sbjct: 227 SSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTST 286
Query: 143 GTKSSMMGAGPATPGLT 93
+ S + ++P T
Sbjct: 287 SSTISSSSSSSSSPTST 303
Score = 25.8 bits (54), Expect = 4.1
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = -1
Query: 287 STIAGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAIGTKSSMMGAGPA 108
S+ + PT + SST++ + S+ + + M S+SS + PT+ + S + P+
Sbjct: 295 SSSSSPT---STSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPS 351
Query: 107 T 105
+
Sbjct: 352 S 352
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 1.8
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = -1
Query: 314 SATGARGGLSTIAGPTEIGTNSSTMAGPTEIGSNSLTMAGPT--EMGSNSSMMAGPTAIG 141
S++ A L++ + TNS+T A PT S+SLT + T + S+S+ + +
Sbjct: 77 SSSAASSSLTSSSSLASSSTNSTTSASPT---SSSLTSSSATSSSLASSSTTSSSLASSS 133
Query: 140 TKSSMMGAGPAT 105
SS + + T
Sbjct: 134 ITSSSLASSSIT 145
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = -3
Query: 129 DDGSRSGNAGTHQALSRAGDSNGHHGSEGQEEFHSFSSS 13
+D S + G H ++ + E +EEFH F S+
Sbjct: 169 EDSEVSDDTGDHGSVDELESEREGNSGEEEEEFHGFESN 207
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 26.2 bits (55), Expect = 3.1
Identities = 18/77 (23%), Positives = 29/77 (37%)
Frame = -1
Query: 329 TRGVLSATGARGGLSTIAGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPT 150
T ++TG+ G G T +S+ + GS + P +GS ++ T
Sbjct: 162 TTPAAASTGSLFGKPAATGTTSNAPPASSTSTTPATGSGGFSFGKPASLGSTNNASTSTT 221
Query: 149 AIGTKSSMMGAGPATPG 99
A S A + PG
Sbjct: 222 ANSGFSFGKPATTSAPG 238
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 26.2 bits (55), Expect = 3.1
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 219 FELVDDGRSDGNGLELIYDGRPDSDRYKVVDDGSRSGNAGTHQALSRAG 73
F++ DD S G E +DG + D +R GN T++A + G
Sbjct: 212 FQISDDQDS---GREWFWDGENAESDSSLNGDNTRGGNISTNRAFNNMG 257
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.0 bits (52), Expect = 7.1
Identities = 16/58 (27%), Positives = 21/58 (36%)
Frame = -3
Query: 177 ELIYDGRPDSDRYKVVDDGSRSGNAGTHQALSRAGDSNGHHGSEGQEEFHSFSSSLPS 4
EL+Y D DR+ V+D G R S +F + SLPS
Sbjct: 262 ELVYPKLLDDDRFYVLDSGERRKEVFEEYCKSVVSTKKITRRKNTLSDFWTLLHSLPS 319
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.0 bits (52), Expect = 7.1
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -3
Query: 195 SDGNGLELIYDGRPDSDRYKVVDDGSRSGNAGTHQALSRAGDSNG-HHGSEGQE 37
S+ N + + +G+ + R D S N+ + A+SRAG SNG + G++ ++
Sbjct: 1506 SNDNKRDEVTEGKDKNKR----QDISGESNSRQNNAISRAGRSNGSNRGNDSRD 1555
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.0 bits (52), Expect = 7.1
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 516 GSNGS-DVSNLDRLGDGAIDNDHGLSNDFGFVNDNHGLRDNGID 388
GSN S ++SN+ DND+ ND N+N+ N D
Sbjct: 509 GSNSSSNISNVANFDSAEDDNDNDNDNDRDSNNNNNNNNTNTDD 552
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 25.0 bits (52), Expect = 7.1
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -3
Query: 423 NDNHGLRDNGIDTGSGDNRGRASLVDVQNDLHERSAVSN 307
ND D D GS + RASL QN +S N
Sbjct: 18 NDTQSESDLSFDHGSSEKLNRASLPKTQNSAIPQSNALN 56
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.0 bits (52), Expect = 7.1
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 516 GSNGS-DVSNLDRLGDGAIDNDHGLSNDFGFVNDNHGLRDNGID 388
GSN S ++SN+ DND+ ND N+N+ N D
Sbjct: 509 GSNSSSNISNVANFDSAEDDNDNDNDNDRDSNNNNNNNNTNTDD 552
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.0 bits (52), Expect = 7.1
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -3
Query: 303 GKRRAVYDS--GSNGDRYELVDDGRPNGDRFELVDDGRSDGNGL 178
GKR V S G+NG Y V G P G F+++ G +G+
Sbjct: 413 GKRNVVIVSSAGNNGPAYTTV--GAPGGTTFDVISVGAYVTSGM 454
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.0 bits (52), Expect = 7.1
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 157 PAIIDEFEPISVGPAIVN--EFEPISVGPAIVDEFVPISVGPAIVDSPPLAP 306
P I F + + P +++ F P+S+ P + F+P+S +++P L P
Sbjct: 614 PNSISSFSEVLL-PNLISTLNFAPLSLIPLLRKSFLPLSYNGFGIEAPSLNP 664
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 7.1
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = -1
Query: 293 GLSTIAGPTEIGTNSSTMAGPTEIGSNSLTMAG-PTEMGSNSSMMAGPTAIGTKSSMMGA 117
G+ +A P + +S++A PT ++S+ + G PT G+ G +A GT++
Sbjct: 443 GMEAMAMPPGV---TSSIAVPT---TSSMPLQGMPTMFGA-----PGVSAPGTEAP---- 487
Query: 116 GPATPGLTRPLVGP 75
G TPGLT P V P
Sbjct: 488 GTGTPGLTTPGVDP 501
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 24.6 bits (51), Expect = 9.4
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Frame = -1
Query: 305 GARGGLSTIAGPTEIGTNSSTMAGPTE--IGSNSLTMAGPTEMGSNSSMMAGPTAIGTKS 132
G G+S I ++ +G TE G + G+NS + +G S
Sbjct: 804 GNVSGMSGTQTSNPINNATANTSGMTEKAAGHRDSVIGNGGVTGANSMS----STLGGLS 859
Query: 131 SMMGAGPATPGLTRPLVG 78
SM G G A PG+ VG
Sbjct: 860 SMSGMGRAAPGMFMGNVG 877
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 235 PAIVDEFVPISVGPAIVDSPPLAPVADSTPLVQIILNINQASSAPI 372
PAI DE + +D+P + + L++ +++INQAS + +
Sbjct: 178 PAIFDELQRSLSEVSNMDNPSFSKGLHTLHLLECLVDINQASGSDL 223
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,574,181
Number of Sequences: 5004
Number of extensions: 32452
Number of successful extensions: 159
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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