Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_D10
         (533 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    26   0.28 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.64 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   2.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.6  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   6.0  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -3

Query: 504 SDVSNLDRLGDGAIDNDHGLSNDFGF---VNDNHGLRDNGIDTGSGDN 370
           S +   D+L D  I     LS D      VN +HG++ +G  +  GD+
Sbjct: 664 SSIKASDKLKDSRIKTTEKLSTDPNTHFQVNQSHGIKRSGSHSWEGDS 711


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = -3

Query: 513 SNGSDVSNLDRLGDGAIDNDHGLSNDFGFVNDNHGLRDNGIDTGSGDNRGRASL 352
           SN S ++  +   + + +N++  +N+    N+N+G  DNG   G+ +N     +
Sbjct: 223 SNNSTITAGNANTNASNNNNNNNNNN----NNNNGANDNGNGNGASNNNNNGDM 272


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 87  LSRAGDSNGHHGSEGQEEFHSFSSSLPS 4
           L +  +  G HG  G    H  SSS P+
Sbjct: 125 LEQLTNQTGLHGLHGLHGLHGLSSSAPT 152


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 200 AGPTEMGSNSSMMA-GPTAIGTKSSMMGAGPATP 102
           AG T+  + +++   G T     +S  G GPATP
Sbjct: 208 AGSTDASTPATVTTTGATTTLPAASATGTGPATP 241



 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 286 DSPPLAPVADST 321
           D PPL+P +DS+
Sbjct: 439 DQPPLSPQSDSS 450


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 173 SSMMAGPTAIGTKSSMM 123
           +S +AG  AIGT + MM
Sbjct: 275 NSTLAGGVAIGTAAGMM 291


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,913
Number of Sequences: 438
Number of extensions: 2667
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)