Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_D09
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   244   9e-66
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    55   1e-08
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   1.4  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    27   3.3  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    26   4.4  
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    26   5.8  
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    25   7.6  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  244 bits (597), Expect = 9e-66
 Identities = 113/197 (57%), Positives = 148/197 (75%)
 Frame = +2

Query: 83  KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHL 262
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  LRG + ++MGKNTM+R+A++  +
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67

Query: 263 ETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG 442
              P LE+LLP ++GNVGFVFT  DL +VR+ ++ N + APARP AIAPL V +PA NTG
Sbjct: 68  NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTG 127

Query: 443 LGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVV 622
           + P KTSFFQAL IPTKI++GTIEI +DVH++    KVG SEATLLNMLNISPF+YG+ V
Sbjct: 128 MEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDV 187

Query: 623 KQVYDSGNIFAPAILDI 673
             +YD GN+F+P ILD+
Sbjct: 188 LTIYDQGNVFSPEILDV 204


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 58/207 (28%), Positives = 92/207 (44%), Gaps = 18/207 (8%)
 Frame = +2

Query: 53  KMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNT 232
           K G E KA      F  + Q LD +   +I    N+ +  +++IR   +G S + MGK  
Sbjct: 17  KKGHEGKAA----LFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDWKG-SRIFMGKTK 71

Query: 233 MMRKAIKDHLETNPA--LEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAP-ARPGAI 403
           +M KA+    E   A  + KL   + G VG +FT     +V     E+ VQ   AR GA+
Sbjct: 72  VMAKALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAV 130

Query: 404 APLSVVIPA----HNTGLGPEKTSFF---------QALSIPTKISKGTIEIINDVHILKP 544
           AP + VIPA       G  P +             + L +PT +  G + ++ D  +   
Sbjct: 131 APFTHVIPAGPVYSRAGQIPVEDDILLTHTLEPQVRQLGMPTVLKNGVVTLLADFPLCTE 190

Query: 545 GDKVGASEATLLNMLNI--SPFSYGLV 619
           G ++ + +  LL +  I  + F  GL+
Sbjct: 191 GQQLDSRQTRLLKLFGITAAEFKVGLL 217


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 519 IISIVPFEILVGMERAWKKEVFSGPRPVL*AGMTTDNGAMAP 394
           IIS  P + L+G+  AW  E  S  R  +    T+    +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 630 TCLTTRPYEKGEMFNMLRRVASEAP 556
           + LT  PYEKGE  N +R   S  P
Sbjct: 279 SALTRLPYEKGEFINFVRYHPSITP 303


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 649 DVTGV-VHLFDNKTIRKGRDVQHVEK 575
           D+ G  V L D   +RKG DVQ +EK
Sbjct: 283 DINGFPVLLSDTAGLRKGEDVQEIEK 308


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 35  PYFTQSKMGREDKATWKSNY 94
           PYF Q+ M   D A+W SN+
Sbjct: 318 PYFQQALMINVDLASWASNF 337


>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 663 IAGAKMLPESYTCLTTRPYEKGEMFNMLRRVASEAPT 553
           + G K LP+S  CL      K  M +M+  VASE  T
Sbjct: 241 VGGEKTLPQSIACLA-----KDGMISMIGFVASEGTT 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,092,384
Number of Sequences: 5004
Number of extensions: 66938
Number of successful extensions: 231
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)