Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_D09
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)        232   2e-61
SB_8631| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.0  
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.0  
SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score =  232 bits (568), Expect = 2e-61
 Identities = 109/151 (72%), Positives = 127/151 (84%)
 Frame = +2

Query: 110 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKL 289
           Q LDEYPK F+VG DNVGS+QMQ IR SLRG   VLMGKNTM+RKAI+ HLE NP LEKL
Sbjct: 1   QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNPDLEKL 60

Query: 290 LPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFF 469
           LPHIKGN+GFVFT+ DL DVR  ++ENKV APA+ G IAP+ V +PA NTGLGPEKTSFF
Sbjct: 61  LPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAPIDVFVPAGNTGLGPEKTSFF 120

Query: 470 QALSIPTKISKGTIEIINDVHILKPGDKVGA 562
           QAL+IPTKI++GTIEIINDVH++K  +K+ A
Sbjct: 121 QALAIPTKIARGTIEIINDVHLIKKDEKLKA 151


>SB_8631| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 676 LDVENCRREDVTGVVHLFDNKTIRKGRDVQHVEKSSFR 563
           L+VE  +RE +  +   FD   + + R ++HVE+S  R
Sbjct: 93  LNVEELQREILDDIKRAFDEGDVEELRSLKHVERSKLR 130


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +2

Query: 365  ENKVQAPARPGAIAPLSVVIPAHN--TGLGPEKTSFFQALSIPTKISKGTIEIINDVHIL 538
            E ++ +PA     +P S+        TGL P   S  Q LS+ T +   ++    D+   
Sbjct: 2069 EPRIVSPAGSSLASPTSIATSVITGVTGLHPVTVSHHQPLSVITSLVSASVSSTTDMQNS 2128

Query: 539  KPGDK 553
             PG K
Sbjct: 2129 TPGKK 2133


>SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 181 DPYFIAWSQHCAHGQKHHDEESHQGPS*NKSSSRKTASS 297
           D Y     QH  H Q  HD ++H+  + +++++R  A S
Sbjct: 144 DQYTTQPDQHMTHNQIDHDTQTHRPTTRSQTNTRHAARS 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,446,834
Number of Sequences: 59808
Number of extensions: 523572
Number of successful extensions: 1432
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1431
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)