Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_D09
(677 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M17885-1|AAA36470.1| 317|Homo sapiens protein ( Human acidic ri... 343 5e-94
BC015690-1|AAH15690.1| 317|Homo sapiens ribosomal protein, larg... 343 5e-94
BC015173-1|AAH15173.1| 317|Homo sapiens ribosomal protein, larg... 343 5e-94
BC009867-1|AAH09867.1| 317|Homo sapiens ribosomal protein, larg... 343 5e-94
BC008594-1|AAH08594.1| 317|Homo sapiens ribosomal protein, larg... 343 5e-94
BC008092-1|AAH08092.1| 317|Homo sapiens ribosomal protein, larg... 343 5e-94
BC005863-1|AAH05863.1| 317|Homo sapiens ribosomal protein, larg... 343 5e-94
BC003655-1|AAH03655.1| 317|Homo sapiens ribosomal protein, larg... 343 5e-94
BC001834-1|AAH01834.1| 317|Homo sapiens ribosomal protein, larg... 343 5e-94
BC001127-1|AAH01127.1| 317|Homo sapiens ribosomal protein, larg... 343 5e-94
BC000752-1|AAH00752.1| 317|Homo sapiens ribosomal protein, larg... 343 5e-94
BC000345-1|AAH00345.1| 317|Homo sapiens ribosomal protein, larg... 343 5e-94
BC000087-1|AAH00087.1| 317|Homo sapiens ribosomal protein, larg... 343 5e-94
AC004263-1|AAC05176.1| 317|Homo sapiens WUGSC:H_278C19.2 protein. 343 5e-94
AK222468-1|BAD96188.1| 317|Homo sapiens ribosomal protein P0 va... 341 1e-93
AK222571-1|BAD96291.1| 317|Homo sapiens ribosomal protein P0 va... 339 4e-93
AY064377-1|AAL62450.1| 317|Homo sapiens BLOCK 23 protein. 338 1e-92
BC107717-1|AAI07718.1| 255|Homo sapiens RPLP0 protein protein. 263 3e-70
BC070194-1|AAH70194.1| 254|Homo sapiens RPLP0 protein protein. 255 1e-67
BC104645-1|AAI04646.1| 157|Homo sapiens RPLP0 protein protein. 77 4e-14
U76604-1|AAB51499.1| 1497|Homo sapiens 180 kDa bullous pemphigoi... 31 3.8
M91669-1|AAA35605.1| 1532|Homo sapiens autoantigen protein. 31 3.8
BC004478-1|AAH04478.1| 393|Homo sapiens COL17A1 protein protein. 31 3.8
AL138761-6|CAM13376.1| 417|Homo sapiens collagen type XVII alph... 31 3.8
AL138761-5|CAC00589.1| 1497|Homo sapiens collagen type XVII alph... 31 3.8
AL138761-4|CAI12398.1| 1415|Homo sapiens collagen type XVII alph... 31 3.8
U75697-1|AAB88241.1| 428|Homo sapiens RPD3-2B protein. 30 6.6
U75696-1|AAB88240.1| 429|Homo sapiens RPD3-2A protein. 30 6.6
U66914-1|AAC52038.1| 428|Homo sapiens histone deacetylase 3 pro... 30 6.6
BC000614-1|AAH00614.1| 428|Homo sapiens histone deacetylase 3 p... 30 6.6
AF059650-1|AAC26509.1| 428|Homo sapiens histone deacetylase 3 p... 30 6.6
AF053138-1|AAC08351.1| 259|Homo sapiens histone deacetylase 3 p... 30 6.6
AF039703-1|AAC98927.1| 428|Homo sapiens histone deacetylase 3 p... 30 6.6
AF005482-1|AAB87752.1| 371|Homo sapiens histone deacetylase-3C ... 30 6.6
>M17885-1|AAA36470.1| 317|Homo sapiens protein ( Human acidic
ribosomal phosphoprotein P0 mRNA, complete cds. ).
Length = 317
Score = 343 bits (842), Expect = 5e-94
Identities = 159/206 (77%), Positives = 185/206 (89%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 415
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 416 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI 595
V +PA NTGLGPEKTSFFQAL I TKIS+GTIEI++DV ++K GDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 596 SPFSYGLVVKQVYDSGNIFAPAILDI 673
SPFS+GLV++QV+D+G+I+ P +LDI
Sbjct: 181 SPFSFGLVIQQVFDNGSIYNPEVLDI 206
>BC015690-1|AAH15690.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 343 bits (842), Expect = 5e-94
Identities = 159/206 (77%), Positives = 185/206 (89%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 415
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 416 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI 595
V +PA NTGLGPEKTSFFQAL I TKIS+GTIEI++DV ++K GDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 596 SPFSYGLVVKQVYDSGNIFAPAILDI 673
SPFS+GLV++QV+D+G+I+ P +LDI
Sbjct: 181 SPFSFGLVIQQVFDNGSIYNPEVLDI 206
>BC015173-1|AAH15173.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 343 bits (842), Expect = 5e-94
Identities = 159/206 (77%), Positives = 185/206 (89%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 415
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 416 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI 595
V +PA NTGLGPEKTSFFQAL I TKIS+GTIEI++DV ++K GDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 596 SPFSYGLVVKQVYDSGNIFAPAILDI 673
SPFS+GLV++QV+D+G+I+ P +LDI
Sbjct: 181 SPFSFGLVIQQVFDNGSIYNPEVLDI 206
>BC009867-1|AAH09867.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 343 bits (842), Expect = 5e-94
Identities = 159/206 (77%), Positives = 185/206 (89%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 415
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 416 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI 595
V +PA NTGLGPEKTSFFQAL I TKIS+GTIEI++DV ++K GDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 596 SPFSYGLVVKQVYDSGNIFAPAILDI 673
SPFS+GLV++QV+D+G+I+ P +LDI
Sbjct: 181 SPFSFGLVIQQVFDNGSIYNPEVLDI 206
>BC008594-1|AAH08594.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 343 bits (842), Expect = 5e-94
Identities = 159/206 (77%), Positives = 185/206 (89%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 415
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 416 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI 595
V +PA NTGLGPEKTSFFQAL I TKIS+GTIEI++DV ++K GDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 596 SPFSYGLVVKQVYDSGNIFAPAILDI 673
SPFS+GLV++QV+D+G+I+ P +LDI
Sbjct: 181 SPFSFGLVIQQVFDNGSIYNPEVLDI 206
>BC008092-1|AAH08092.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 343 bits (842), Expect = 5e-94
Identities = 159/206 (77%), Positives = 185/206 (89%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 415
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 416 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI 595
V +PA NTGLGPEKTSFFQAL I TKIS+GTIEI++DV ++K GDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 596 SPFSYGLVVKQVYDSGNIFAPAILDI 673
SPFS+GLV++QV+D+G+I+ P +LDI
Sbjct: 181 SPFSFGLVIQQVFDNGSIYNPEVLDI 206
>BC005863-1|AAH05863.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 343 bits (842), Expect = 5e-94
Identities = 159/206 (77%), Positives = 185/206 (89%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 415
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 416 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI 595
V +PA NTGLGPEKTSFFQAL I TKIS+GTIEI++DV ++K GDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 596 SPFSYGLVVKQVYDSGNIFAPAILDI 673
SPFS+GLV++QV+D+G+I+ P +LDI
Sbjct: 181 SPFSFGLVIQQVFDNGSIYNPEVLDI 206
>BC003655-1|AAH03655.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 343 bits (842), Expect = 5e-94
Identities = 159/206 (77%), Positives = 185/206 (89%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 415
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 416 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI 595
V +PA NTGLGPEKTSFFQAL I TKIS+GTIEI++DV ++K GDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 596 SPFSYGLVVKQVYDSGNIFAPAILDI 673
SPFS+GLV++QV+D+G+I+ P +LDI
Sbjct: 181 SPFSFGLVIQQVFDNGSIYNPEVLDI 206
>BC001834-1|AAH01834.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 343 bits (842), Expect = 5e-94
Identities = 159/206 (77%), Positives = 185/206 (89%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 415
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 416 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI 595
V +PA NTGLGPEKTSFFQAL I TKIS+GTIEI++DV ++K GDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 596 SPFSYGLVVKQVYDSGNIFAPAILDI 673
SPFS+GLV++QV+D+G+I+ P +LDI
Sbjct: 181 SPFSFGLVIQQVFDNGSIYNPEVLDI 206
>BC001127-1|AAH01127.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 343 bits (842), Expect = 5e-94
Identities = 159/206 (77%), Positives = 185/206 (89%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 415
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 416 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI 595
V +PA NTGLGPEKTSFFQAL I TKIS+GTIEI++DV ++K GDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 596 SPFSYGLVVKQVYDSGNIFAPAILDI 673
SPFS+GLV++QV+D+G+I+ P +LDI
Sbjct: 181 SPFSFGLVIQQVFDNGSIYNPEVLDI 206
>BC000752-1|AAH00752.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 343 bits (842), Expect = 5e-94
Identities = 159/206 (77%), Positives = 185/206 (89%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 415
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 416 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI 595
V +PA NTGLGPEKTSFFQAL I TKIS+GTIEI++DV ++K GDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 596 SPFSYGLVVKQVYDSGNIFAPAILDI 673
SPFS+GLV++QV+D+G+I+ P +LDI
Sbjct: 181 SPFSFGLVIQQVFDNGSIYNPEVLDI 206
>BC000345-1|AAH00345.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 343 bits (842), Expect = 5e-94
Identities = 159/206 (77%), Positives = 185/206 (89%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 415
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 416 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI 595
V +PA NTGLGPEKTSFFQAL I TKIS+GTIEI++DV ++K GDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 596 SPFSYGLVVKQVYDSGNIFAPAILDI 673
SPFS+GLV++QV+D+G+I+ P +LDI
Sbjct: 181 SPFSFGLVIQQVFDNGSIYNPEVLDI 206
>BC000087-1|AAH00087.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 343 bits (842), Expect = 5e-94
Identities = 159/206 (77%), Positives = 185/206 (89%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 415
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 416 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI 595
V +PA NTGLGPEKTSFFQAL I TKIS+GTIEI++DV ++K GDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 596 SPFSYGLVVKQVYDSGNIFAPAILDI 673
SPFS+GLV++QV+D+G+I+ P +LDI
Sbjct: 181 SPFSFGLVIQQVFDNGSIYNPEVLDI 206
>AC004263-1|AAC05176.1| 317|Homo sapiens WUGSC:H_278C19.2 protein.
Length = 317
Score = 343 bits (842), Expect = 5e-94
Identities = 159/206 (77%), Positives = 185/206 (89%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 415
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 416 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI 595
V +PA NTGLGPEKTSFFQAL I TKIS+GTIEI++DV ++K GDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 596 SPFSYGLVVKQVYDSGNIFAPAILDI 673
SPFS+GLV++QV+D+G+I+ P +LDI
Sbjct: 181 SPFSFGLVIQQVFDNGSIYNPEVLDI 206
>AK222468-1|BAD96188.1| 317|Homo sapiens ribosomal protein P0
variant protein.
Length = 317
Score = 341 bits (839), Expect = 1e-93
Identities = 158/206 (76%), Positives = 185/206 (89%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMG+NTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGRNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 415
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 416 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI 595
V +PA NTGLGPEKTSFFQAL I TKIS+GTIEI++DV ++K GDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 596 SPFSYGLVVKQVYDSGNIFAPAILDI 673
SPFS+GLV++QV+D+G+I+ P +LDI
Sbjct: 181 SPFSFGLVIQQVFDNGSIYNPEVLDI 206
>AK222571-1|BAD96291.1| 317|Homo sapiens ribosomal protein P0
variant protein.
Length = 317
Score = 339 bits (834), Expect = 4e-93
Identities = 158/206 (76%), Positives = 184/206 (89%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 415
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 416 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI 595
V +PA NTGLGPEKTSF QAL I TKIS+GTIEI++DV ++K GDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFSQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 596 SPFSYGLVVKQVYDSGNIFAPAILDI 673
SPFS+GLV++QV+D+G+I+ P +LDI
Sbjct: 181 SPFSFGLVIQQVFDNGSIYNPEVLDI 206
>AY064377-1|AAL62450.1| 317|Homo sapiens BLOCK 23 protein.
Length = 317
Score = 338 bits (830), Expect = 1e-92
Identities = 158/205 (77%), Positives = 182/205 (88%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG +VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKVVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 415
MRKAI+ HLE NPALEKLLPHI GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIWGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 416 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI 595
V +PA NTGLGPEKTSFFQAL I TKIS+GTIEI++DV ++K GDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 596 SPFSYGLVVKQVYDSGNIFAPAILD 670
SPFS+GLV++QV+D+G+I+ P +LD
Sbjct: 181 SPFSFGLVIQQVFDNGSIYNPEVLD 205
>BC107717-1|AAI07718.1| 255|Homo sapiens RPLP0 protein protein.
Length = 255
Score = 263 bits (645), Expect = 3e-70
Identities = 123/155 (79%), Positives = 138/155 (89%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 415
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 416 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEII 520
V +PA NTGLGPEKTSFFQAL I TKIS+GTIEI+
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEIL 155
>BC070194-1|AAH70194.1| 254|Homo sapiens RPLP0 protein protein.
Length = 254
Score = 255 bits (624), Expect = 1e-67
Identities = 121/155 (78%), Positives = 137/155 (88%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 415
MRKAI+ HLE NPALEKLLP ++GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLP-LRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 119
Query: 416 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEII 520
V +PA NTGLGPEKTSFFQAL I TKIS+GTIEI+
Sbjct: 120 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEIL 154
>BC104645-1|AAI04646.1| 157|Homo sapiens RPLP0 protein protein.
Length = 157
Score = 77.4 bits (182), Expect = 4e-14
Identities = 34/45 (75%), Positives = 42/45 (93%)
Frame = +2
Query: 539 KPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGNIFAPAILDI 673
K GDKVGASEATLLNMLNISPFS+GLV++QV+D+G+I+ P +LDI
Sbjct: 2 KTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDI 46
>U76604-1|AAB51499.1| 1497|Homo sapiens 180 kDa bullous pemphigoid
antigen 2/type XVII collagen protein.
Length = 1497
Score = 31.1 bits (67), Expect = 3.8
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -3
Query: 648 MLPESYTCLTTRPYEKGEMFNMLRRVASEAPTLSPGFRIWTSL 520
M +S + L T Y G +F + +AS +PTL PG +S+
Sbjct: 238 MTTQSSSLLNTNAYSAGSVFGVPNNMASCSPTLHPGLSTSSSV 280
>M91669-1|AAA35605.1| 1532|Homo sapiens autoantigen protein.
Length = 1532
Score = 31.1 bits (67), Expect = 3.8
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -3
Query: 648 MLPESYTCLTTRPYEKGEMFNMLRRVASEAPTLSPGFRIWTSL 520
M +S + L T Y G +F + +AS +PTL PG +S+
Sbjct: 273 MTTQSSSLLNTNAYSAGSVFGVPNNMASCSPTLHPGLSTSSSV 315
>BC004478-1|AAH04478.1| 393|Homo sapiens COL17A1 protein protein.
Length = 393
Score = 31.1 bits (67), Expect = 3.8
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -3
Query: 648 MLPESYTCLTTRPYEKGEMFNMLRRVASEAPTLSPGFRIWTSL 520
M +S + L T Y G +F + +AS +PTL PG +S+
Sbjct: 238 MTTQSSSLLNTNAYSAGSVFGVPNNMASCSPTLHPGLSTSSSV 280
>AL138761-6|CAM13376.1| 417|Homo sapiens collagen type XVII alpha 1
protein.
Length = 417
Score = 31.1 bits (67), Expect = 3.8
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -3
Query: 648 MLPESYTCLTTRPYEKGEMFNMLRRVASEAPTLSPGFRIWTSL 520
M +S + L T Y G +F + +AS +PTL PG +S+
Sbjct: 238 MTTQSSSLLNTNAYSAGSVFGVPNNMASCSPTLHPGLSTSSSV 280
>AL138761-5|CAC00589.1| 1497|Homo sapiens collagen type XVII alpha 1
protein.
Length = 1497
Score = 31.1 bits (67), Expect = 3.8
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -3
Query: 648 MLPESYTCLTTRPYEKGEMFNMLRRVASEAPTLSPGFRIWTSL 520
M +S + L T Y G +F + +AS +PTL PG +S+
Sbjct: 238 MTTQSSSLLNTNAYSAGSVFGVPNNMASCSPTLHPGLSTSSSV 280
>AL138761-4|CAI12398.1| 1415|Homo sapiens collagen type XVII alpha 1
protein.
Length = 1415
Score = 31.1 bits (67), Expect = 3.8
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -3
Query: 648 MLPESYTCLTTRPYEKGEMFNMLRRVASEAPTLSPGFRIWTSL 520
M +S + L T Y G +F + +AS +PTL PG +S+
Sbjct: 238 MTTQSSSLLNTNAYSAGSVFGVPNNMASCSPTLHPGLSTSSSV 280
>U75697-1|AAB88241.1| 428|Homo sapiens RPD3-2B protein.
Length = 428
Score = 30.3 bits (65), Expect = 6.6
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 68 DKATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 205
D ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 228 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 276
>U75696-1|AAB88240.1| 429|Homo sapiens RPD3-2A protein.
Length = 429
Score = 30.3 bits (65), Expect = 6.6
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 68 DKATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 205
D ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 229 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 277
>U66914-1|AAC52038.1| 428|Homo sapiens histone deacetylase 3
protein.
Length = 428
Score = 30.3 bits (65), Expect = 6.6
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 68 DKATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 205
D ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 228 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 276
>BC000614-1|AAH00614.1| 428|Homo sapiens histone deacetylase 3
protein.
Length = 428
Score = 30.3 bits (65), Expect = 6.6
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 68 DKATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 205
D ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 228 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 276
>AF059650-1|AAC26509.1| 428|Homo sapiens histone deacetylase 3
protein.
Length = 428
Score = 30.3 bits (65), Expect = 6.6
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 68 DKATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 205
D ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 228 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 276
>AF053138-1|AAC08351.1| 259|Homo sapiens histone deacetylase 3
protein.
Length = 259
Score = 30.3 bits (65), Expect = 6.6
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 68 DKATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 205
D ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 134 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 182
>AF039703-1|AAC98927.1| 428|Homo sapiens histone deacetylase 3
protein.
Length = 428
Score = 30.3 bits (65), Expect = 6.6
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 68 DKATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 205
D ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 228 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 276
>AF005482-1|AAB87752.1| 371|Homo sapiens histone deacetylase-3C
protein.
Length = 371
Score = 30.3 bits (65), Expect = 6.6
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 68 DKATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 205
D ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 171 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 219
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,182,559
Number of Sequences: 237096
Number of extensions: 2632451
Number of successful extensions: 5553
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 5243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5552
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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