Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_D08
         (571 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)             175   3e-44
SB_2591| Best HMM Match : No HMM Matches (HMM E-Value=.)               41   6e-04
SB_50457| Best HMM Match : Amidase (HMM E-Value=2.6e-36)               35   0.054
SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)                        33   0.16 
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.88 
SB_24409| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-14)                 29   3.5  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   6.2  

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score =  175 bits (425), Expect = 3e-44
 Identities = 80/97 (82%), Positives = 91/97 (93%)
 Frame = +2

Query: 167 KLQEPILLLGKEKFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIK 346
           K++EPILLLGKE+F GVDIRV VKGGGH +++YAIRQAISK+L+A+YQKYVDE SKKEI+
Sbjct: 11  KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIYAIRQAISKSLVAYYQKYVDEVSKKEIR 70

Query: 347 DILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 457
           DILVQYDRSLLVADPRR E KKFGGPGAR+RYQKSYR
Sbjct: 71  DILVQYDRSLLVADPRRTEAKKFGGPGARSRYQKSYR 107


>SB_2591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 533

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 34/99 (34%), Positives = 48/99 (48%)
 Frame = +2

Query: 59  GRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVK 238
           G +K + A A+  +G G + VN RP      RL Q K Q        +     D    V 
Sbjct: 338 GYRKRSVAKAWVMKGSGKITVNDRPFVEYFSRL-QDKQQILFPFQVVDCVGQFDASCHVL 396

Query: 239 GGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDIL 355
           GGG   Q  AIR AIS+AL+ F + ++ E  ++EI + L
Sbjct: 397 GGGLTGQAGAIRLAISRALLNFSEDHL-EPLQEEIPESL 434


>SB_50457| Best HMM Match : Amidase (HMM E-Value=2.6e-36)
          Length = 391

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 29/80 (36%), Positives = 37/80 (46%)
 Frame = +2

Query: 218 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 397
           DI+V V GGG   Q  AI+  I++ALI F           ++K  L +     +  D R 
Sbjct: 323 DIKVNVHGGGESGQAGAIKHGITRALIDF---------NADLKPTLSK--AGFVTRDARE 371

Query: 398 CEPKKFGGPGARARYQKSYR 457
            E KK G   AR R Q S R
Sbjct: 372 VERKKCGLRKARRRKQFSKR 391


>SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)
          Length = 119

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 293 LIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 403
           ++AF QKY+D   +KE     +Q+ + +LV+  R CE
Sbjct: 53  VLAFRQKYLDNFGRKETSKRFLQFAQGVLVSLARECE 89


>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2541

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
 Frame = +2

Query: 236 KGGGHVAQ--VYAIRQAISKALIAFYQKYV-DEASKKEIKDILVQYDRSLLVADPRRCEP 406
           K GGH++Q  +  I Q   K L A + K + DE  K++ K+I V+ +RS +    ++ EP
Sbjct: 91  KLGGHLSQPKLKKITQVNKKKLRATHHKAILDEIMKEKAKEIDVKKERSTISRRGKKREP 150

Query: 407 K 409
           +
Sbjct: 151 E 151


>SB_24409| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-14)
          Length = 439

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 20/71 (28%), Positives = 27/71 (38%)
 Frame = +3

Query: 324 KHLRRRSKTF*FNTTEVCWSLTLVVASPRNSVVQAPVPDTRNPTVNIISICIVWYRLDLF 503
           KH  R +  F F TT     L+    +P N+      PDT+N T      C+      + 
Sbjct: 19  KHHLRTTGNFCF-TTRTTGILSQDTQTPLNNFYNTEYPDTQNTTCTTGDFCLTTRTTGIL 77

Query: 504 SLINAIPLGVF 536
           S     PL  F
Sbjct: 78  SQDTQTPLNNF 88


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 5/23 (21%)
 Frame = -3

Query: 437  WHGRLDHRISWA-----RNDEGQ 384
            WHGRL++R SW+     RND  Q
Sbjct: 953  WHGRLNNRYSWSGKPKNRNDRSQ 975


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,050,581
Number of Sequences: 59808
Number of extensions: 429148
Number of successful extensions: 1046
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)