Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_D06
(318 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr... 26 1.2
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 25 2.1
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po... 25 2.1
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 2.8
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 25 2.8
SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces pomb... 24 4.8
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 24 6.4
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 24 6.4
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 24 6.4
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 23 8.5
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 23 8.5
>SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 26.2 bits (55), Expect = 1.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 62 ERPHSAINRHDYTHNQ 15
ERPHS IN + Y H++
Sbjct: 44 ERPHSGINLNQYQHHE 59
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 25.4 bits (53), Expect = 2.1
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -3
Query: 139 PTKSNMMYLLVNQLQNKLIKRAGVNENDRTAQSIDTTTHTTNVNLV 2
P NM YL+++ L I G N+N A+SI T VN V
Sbjct: 723 PIWINMNYLILSSLYQNYINTPGPNQN--LARSIYEELRTNVVNNV 766
>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 471
Score = 25.4 bits (53), Expect = 2.1
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -3
Query: 193 DEHHIQRPTLRHCVHCTRPTKSNMMYLLVNQLQNKLIKRAG 71
D+H PT R V C NM + LQ+ IK AG
Sbjct: 226 DDHF--SPTFRDFVSCCLDLNPNMRWSAKELLQHPFIKSAG 264
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.0 bits (52), Expect = 2.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 265 VRGTVTFEDEDPRSIDNYFV 206
V G +TF +E PR I+ +F+
Sbjct: 143 VTGAITFVNESPRVIEPHFI 162
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 25.0 bits (52), Expect = 2.8
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 303 RFQTFYRLSVFALYVE-QLLLRMKIQGQLTIILCADCLTNTIYNDPLY 163
RFQ +R+++ E Q ++ GQLT++ C T + +P+Y
Sbjct: 274 RFQALHRINMIECIPELQSVVCASQSGQLTLLRLI-CTTKILNGNPIY 320
>SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 24.2 bits (50), Expect = 4.8
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 195 LTNTIYNDPLYDT 157
LT T NDP+YDT
Sbjct: 241 LTKTTQNDPVYDT 253
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 23.8 bits (49), Expect = 6.4
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -3
Query: 220 DNYFVR*LFDEHHIQRPTLRHC 155
D+YF FD+ HI HC
Sbjct: 152 DDYFKNTYFDKTHIDHKCKEHC 173
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 23.8 bits (49), Expect = 6.4
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +3
Query: 63 SFTPARFINLFCSWFTNKYIMF 128
+FT + L C W N++ MF
Sbjct: 568 AFTILFLVGLICGWRLNRFTMF 589
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 23.8 bits (49), Expect = 6.4
Identities = 14/55 (25%), Positives = 22/55 (40%)
Frame = +1
Query: 85 LICSVVGLPISTSCLTL*VAYSEHSVVKWVVVYGVRQTISAQNNCQLTLDLHPQK 249
L+C ++ S C + +S HS K + YG + Q+ L P K
Sbjct: 217 LLCGLLSTLASGGCAVVPPKFSAHSFWKEFIQYGATWYTAVPTIHQILLRTPPPK 271
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 23.4 bits (48), Expect = 8.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -2
Query: 98 TEQINKACRGERERPHSAINRHDYTHNQC 12
+E+ AC+G+ + IN H++ +QC
Sbjct: 128 SEEAKNACKGDAKMFADCINEHEF--SQC 154
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 23.4 bits (48), Expect = 8.5
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -3
Query: 193 DEHHIQRPTLRHCVHCTRPTKSNMMYLLV 107
+EH I +P+LR +H RP + ++ +L+
Sbjct: 362 NEHIINQPSLRSALH-ERPLQKSLCAILL 389
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,325,555
Number of Sequences: 5004
Number of extensions: 23787
Number of successful extensions: 54
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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