Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_D06
         (318 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0092 - 22759791-22760676,22761446-22761813,22762202-227622...    27   3.2  
04_03_0710 - 18916593-18917372,18917467-18917629,18917715-18917959     27   4.2  
01_06_0393 + 28968873-28968918,28969048-28969084,28969165-289693...    27   4.2  
05_04_0404 - 21000267-21001562                                         26   7.4  
03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524           25   9.7  

>04_04_0092 -
           22759791-22760676,22761446-22761813,22762202-22762207,
           22763365-22763603,22764808-22765339
          Length = 676

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 169 TLRHCVHCTRPTKSNMMYLLVNQLQNKLIKRAG 71
           T  HCVH  +  +  ++    N+ QN+ +KR G
Sbjct: 607 TAFHCVHSNKILRPWIIARAANEKQNRKVKRCG 639


>04_03_0710 - 18916593-18917372,18917467-18917629,18917715-18917959
          Length = 395

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 46  ALCGRSRSPRHALLICSVVGL 108
           ALCGR  + RH    CSV G+
Sbjct: 327 ALCGRPETRRHEFRRCSVCGV 347


>01_06_0393 +
           28968873-28968918,28969048-28969084,28969165-28969384,
           28969557-28969715,28969831-28969950,28972154-28972240,
           28972329-28972418,28972516-28972602,28972761-28972877,
           28972945-28973028,28973585-28975324,28975670-28975816,
           28975998-28976431,28976523-28976667
          Length = 1170

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 300 FQTFYRLSVFALYVEQLLLRMKIQGQLTIILCADCLTN 187
           FQ  Y + +F  Y +    RMKI G L +++C   L +
Sbjct: 83  FQLAY-ICLFIFYADSRKTRMKIIGLLVLVVCGFALVS 119


>05_04_0404 - 21000267-21001562
          Length = 431

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 131 LCRSRTVNTVS*SGSLYMVFVKQSAHK 211
           +CRS +V       SLY+V + QS HK
Sbjct: 34  VCRSSSVQRAFFYVSLYLVAIAQSGHK 60


>03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524
          Length = 651

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 140 TYKVKHDVLIGKPTTEQINKACRGERERPHSAINRHDYTHNQCEP 6
           T+K + ++ + K  T  + K+C G   R H  + RH   HN   P
Sbjct: 550 TFKNRAELSVHKKNTCTV-KSC-GRHFRSHKYLRRHQSIHNDDMP 592


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,223,907
Number of Sequences: 37544
Number of extensions: 144398
Number of successful extensions: 353
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)