Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_D06
         (318 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                30   0.35 
SB_44503| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.9  
SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)                  28   1.9  
SB_32815| Best HMM Match : F5_F8_type_C (HMM E-Value=8.7e-07)          27   3.3  
SB_25735| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.3  
SB_14949| Best HMM Match : F5_F8_type_C (HMM E-Value=4.6e-06)          27   4.4  
SB_3143| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   5.8  
SB_30489| Best HMM Match : HEAT (HMM E-Value=9.2e-17)                  26   7.6  
SB_23461| Best HMM Match : DUF504 (HMM E-Value=0.0038)                 26   7.6  

>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4277

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
 Frame = +3

Query: 72   PARFINLFCSWFTNKYIMFDFVGRVQ*TQCRKVGRCIWCSSNNQRTK*LSIDLGSSSSKV 251
            P R +     W  NKY+   F+ R+   +  ++  C W + +N R + L +DLG     V
Sbjct: 837  PNRALTASSKW--NKYLA-PFLARLHNKKKGRMAGC-WAARHNNRKQWLQVDLGKPKQVV 892

Query: 252  TVP-----RTTQKLITYKMSENAQDV 314
             +      R  Q +  YK+ ++A  +
Sbjct: 893  KIATQGCGRVRQYVTRYKIRKSADGI 918


>SB_44503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1347

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
 Frame = -2

Query: 155  CSLYATYKVKHDVLI--GKPTTEQINKACRGERERPHSAINRHDYTHNQCEP 6
            C L A    K  + +  G   TE  N   R  R  P  A+    Y H  C P
Sbjct: 994  CDLVAATSAKMYLAVQGGSGKTEWANDLARDHRNNPRLAVKAQTYHHYLCIP 1045


>SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)
          Length = 1440

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 166 LRHCVHCTRPTKSNMMYLLVNQLQNKLI 83
           +   + C +   S + YLLVNQ  NK +
Sbjct: 726 IERAIQCAKSNPSRIFYLLVNQSANKTV 753


>SB_32815| Best HMM Match : F5_F8_type_C (HMM E-Value=8.7e-07)
          Length = 161

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +3

Query: 162 RKVGRCIWCSSNNQRTK*LSIDLGSS 239
           R  G   WC S+   T  L IDLGSS
Sbjct: 86  RYTGGQSWCPSSGDATPYLEIDLGSS 111


>SB_25735| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = +3

Query: 162 RKVGRCIWCSSNNQRTK*LSIDLGSSSSKVTV----PRTTQKLIT 284
           R  G   WCSS +  T+ L +DLG   +   V     RT  K +T
Sbjct: 235 RLYGGSSWCSSTSANTEYLQVDLGGVKTVTGVATQGSRTQSKWVT 279


>SB_14949| Best HMM Match : F5_F8_type_C (HMM E-Value=4.6e-06)
          Length = 146

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 162 RKVGRCIWCSSNNQRTK*LSIDLG 233
           R  G   WCSS +  T+ L +DLG
Sbjct: 80  RLYGGSSWCSSTSANTEYLQVDLG 103


>SB_3143| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 107 KPTTEQINKACRGERERPHSAINRHDYTHN 18
           KP  EQ  K    ++ERP S +  H  TH+
Sbjct: 16  KPPKEQPRKLEEWQKERPVSGVPLHRQTHS 45


>SB_30489| Best HMM Match : HEAT (HMM E-Value=9.2e-17)
          Length = 722

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 34  CRLIALCGRSRSPRHALLICSV 99
           CRLI  CGR +S R  LL   +
Sbjct: 291 CRLIQECGRGKSYRSRLLFIDI 312


>SB_23461| Best HMM Match : DUF504 (HMM E-Value=0.0038)
          Length = 657

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 157 CVHCTRPTKSNMMYLLVNQLQNKLIKRAGVNENDRTAQSIDT 32
           CV+    T  NM+  L N++Q+ L + A  NEN  T Q  +T
Sbjct: 424 CVYSLENTIFNMLPKLFNKIQSYLERLA--NENKITDQGTET 463


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,302,491
Number of Sequences: 59808
Number of extensions: 192169
Number of successful extensions: 560
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 413004273
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)