Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_D06
(318 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK001305-1|BAA91613.1| 253|Homo sapiens protein ( Homo sapiens ... 29 2.3
BC033762-1|AAH33762.1| 506|Homo sapiens PEO1 protein protein. 29 4.0
BC013349-1|AAH13349.1| 451|Homo sapiens PEO1 protein protein. 29 4.0
AL133215-11|CAI10925.1| 684|Homo sapiens progressive external o... 29 4.0
AL133215-10|CAI10924.1| 582|Homo sapiens progressive external o... 29 4.0
AK025485-1|BAB15148.1| 506|Homo sapiens protein ( Homo sapiens ... 29 4.0
AF292005-1|AAK69559.1| 582|Homo sapiens truncated putative T7-l... 29 4.0
AF292004-1|AAK69558.1| 684|Homo sapiens putative T7-like mitoch... 29 4.0
BC053733-1|AAH53733.1| 323|Homo sapiens chromosome 2 open readi... 27 9.1
AK027104-1|BAB15658.1| 323|Homo sapiens protein ( Homo sapiens ... 27 9.1
AC067957-1|AAX88866.1| 197|Homo sapiens unknown protein. 27 9.1
>AK001305-1|BAA91613.1| 253|Homo sapiens protein ( Homo sapiens
cDNA FLJ10443 fis, clone NT2RP1000782, weakly similar to
PLATELET-ENDOTHELIAL TETRASPAN ANTIGEN 3. ).
Length = 253
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 34 CRLIALCGRSRSPRHALLI 90
C I LCGRSR P + LLI
Sbjct: 229 CACIVLCGRSRDPAYELLI 247
>BC033762-1|AAH33762.1| 506|Homo sapiens PEO1 protein protein.
Length = 506
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 178 VYGVRQTISAQNNCQLTLDLHPQK 249
+ GV + + NNC +TL +HP+K
Sbjct: 360 IIGVFRKFATDNNCHVTLVIHPRK 383
>BC013349-1|AAH13349.1| 451|Homo sapiens PEO1 protein protein.
Length = 451
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 178 VYGVRQTISAQNNCQLTLDLHPQK 249
+ GV + + NNC +TL +HP+K
Sbjct: 407 IIGVFRKFATDNNCHVTLVIHPRK 430
>AL133215-11|CAI10925.1| 684|Homo sapiens progressive external
ophthalmoplegia 1 protein.
Length = 684
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 178 VYGVRQTISAQNNCQLTLDLHPQK 249
+ GV + + NNC +TL +HP+K
Sbjct: 538 IIGVFRKFATDNNCHVTLVIHPRK 561
>AL133215-10|CAI10924.1| 582|Homo sapiens progressive external
ophthalmoplegia 1 protein.
Length = 582
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 178 VYGVRQTISAQNNCQLTLDLHPQK 249
+ GV + + NNC +TL +HP+K
Sbjct: 538 IIGVFRKFATDNNCHVTLVIHPRK 561
>AK025485-1|BAB15148.1| 506|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21832 fis, clone HEP01571. ).
Length = 506
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 178 VYGVRQTISAQNNCQLTLDLHPQK 249
+ GV + + NNC +TL +HP+K
Sbjct: 360 IIGVFRKFATDNNCHVTLVIHPRK 383
>AF292005-1|AAK69559.1| 582|Homo sapiens truncated putative T7-like
mitochondrial DNA helicase protein.
Length = 582
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 178 VYGVRQTISAQNNCQLTLDLHPQK 249
+ GV + + NNC +TL +HP+K
Sbjct: 538 IIGVFRKFATDNNCHVTLVIHPRK 561
>AF292004-1|AAK69558.1| 684|Homo sapiens putative T7-like
mitochondrial DNA helicase protein.
Length = 684
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 178 VYGVRQTISAQNNCQLTLDLHPQK 249
+ GV + + NNC +TL +HP+K
Sbjct: 538 IIGVFRKFATDNNCHVTLVIHPRK 561
>BC053733-1|AAH53733.1| 323|Homo sapiens chromosome 2 open reading
frame 34 protein.
Length = 323
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 237 KIQGQLTIILCADCLTNTIYNDPLYDTV 154
+++G I++CADCL Y L D +
Sbjct: 220 QLEGHFDIVMCADCLFLDQYRASLVDAI 247
>AK027104-1|BAB15658.1| 323|Homo sapiens protein ( Homo sapiens
cDNA: FLJ23451 fis, clone HSI06456. ).
Length = 323
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 237 KIQGQLTIILCADCLTNTIYNDPLYDTV 154
+++G I++CADCL Y L D +
Sbjct: 220 QLEGHFDIVMCADCLFLDQYRASLVDAI 247
>AC067957-1|AAX88866.1| 197|Homo sapiens unknown protein.
Length = 197
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 237 KIQGQLTIILCADCLTNTIYNDPLYDTV 154
+++G I++CADCL Y L D +
Sbjct: 94 QLEGHFDIVMCADCLFLDQYRASLVDAI 121
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,946,140
Number of Sequences: 237096
Number of extensions: 863332
Number of successful extensions: 1675
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1675
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1511340428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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