Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_D06
         (318 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse transc...    32   0.14 
BT022600-1|AAY55016.1|  540|Drosophila melanogaster IP11950p pro...    27   3.9  
BT029572-1|ABL75631.1|  211|Drosophila melanogaster IP16890p pro...    27   6.9  

>U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse
            transcriptase polyprotein protein.
          Length = 1041

 Score = 32.3 bits (70), Expect = 0.14
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -3

Query: 154  VHCTRPTKSNMMYLLVNQLQNKLIKRAGVNENDRTAQSIDTTTHTTNVNL 5
            +H T P  +N +  +VN+ Q K ++R  V   DRT +  +T     N  L
Sbjct: 958  IHSTPPELANEIVEMVNEAQEKQLRRENVTRRDRTFEVGETVMVKQNNRL 1007


>BT022600-1|AAY55016.1|  540|Drosophila melanogaster IP11950p
           protein.
          Length = 540

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 16/47 (34%), Positives = 18/47 (38%)
 Frame = +1

Query: 16  WLCV*SCRLIALCGRSRSPRHALLICSVVGLPISTSCLTL*VAYSEH 156
           W    SCR  A C  S  P H+  ICS      S   +    A S H
Sbjct: 7   WATPTSCRPAASCCASNLPSHSSAICSATSAGTSRPPIITIAARSVH 53


>BT029572-1|ABL75631.1|  211|Drosophila melanogaster IP16890p
           protein.
          Length = 211

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +1

Query: 7   GSHWLCV*SCRLIALCGRSRSPRHALLICSVVGLPISTSCLTL*VAYSEHSVVKWVVVYG 186
           G  W+ +    L+ + GR  S   A +I S VG+ +   CL L   ++E S    +V  G
Sbjct: 54  GLFWITMIVMLLVGIHGRHPSCVRAWIIFSCVGIMVE-MCLVLYAVFNESSFQMGLVKNG 112

Query: 187 V 189
           +
Sbjct: 113 L 113


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,500,994
Number of Sequences: 53049
Number of extensions: 270106
Number of successful extensions: 808
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 652945002
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)