Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_D06
         (318 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003385-7|AAB54247.1|  381|Caenorhabditis elegans Serpentine re...    33   0.059
AL032655-6|CAA21722.1|  462|Caenorhabditis elegans Hypothetical ...    27   2.2  
Z79604-4|CAB60456.1|  598|Caenorhabditis elegans Hypothetical pr...    27   2.9  
Z81496-1|CAB04067.1|  226|Caenorhabditis elegans Hypothetical pr...    26   5.1  
AL132902-3|CAC14419.1|  271|Caenorhabditis elegans Hypothetical ...    26   6.8  
AL132902-2|CAB81987.1|  271|Caenorhabditis elegans Hypothetical ...    26   6.8  
AF003137-3|AAB93640.1|  625|Caenorhabditis elegans Hypothetical ...    26   6.8  
U50300-2|AAC48102.1|  335|Caenorhabditis elegans Serpentine rece...    25   8.9  

>AF003385-7|AAB54247.1|  381|Caenorhabditis elegans Serpentine
           receptor, class w protein7 protein.
          Length = 381

 Score = 32.7 bits (71), Expect = 0.059
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = -3

Query: 181 IQRPTLRHCVHCTRPTKSNMMYLLVNQLQNKLIKRAGVNENDRTAQSI--DTTTHTTNVN 8
           +   ++ HCV C         Y + +Q ++ L K  GV + D+T + +  +TTTH T VN
Sbjct: 321 VMASSIAHCVIC---------YCMSSQYRDTLKKMIGVGKEDKTVKIVIVETTTHPTTVN 371


>AL032655-6|CAA21722.1|  462|Caenorhabditis elegans Hypothetical
           protein Y6B3B.11 protein.
          Length = 462

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 216 LSIDLGSSSSKVTVPRTTQKLITY 287
           L+I LG SSS +TVP T  +L  Y
Sbjct: 330 LNIALGFSSSMITVPATPIRLFAY 353


>Z79604-4|CAB60456.1|  598|Caenorhabditis elegans Hypothetical
           protein ZK662.5 protein.
          Length = 598

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +3

Query: 48  AVRSFSFTPARFINLFCSWFTNKYIMFDFVGRVQ 149
           AV S+SF+  RF NL CS   N Y +F   G V+
Sbjct: 188 AVNSYSFSNVRFSNLVCS-NQNVYNVFATNGLVK 220


>Z81496-1|CAB04067.1|  226|Caenorhabditis elegans Hypothetical
           protein F09C6.1 protein.
          Length = 226

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 199 ISAQNNCQLTLDLHPQK*LFHVQRKN 276
           +SAQ N QLTLD H     F   +KN
Sbjct: 161 LSAQGNNQLTLDYHVNASEFWTPKKN 186


>AL132902-3|CAC14419.1|  271|Caenorhabditis elegans Hypothetical
           protein Y71A12B.3 protein.
          Length = 271

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -1

Query: 306 VRFQTFYRLSVFALYVEQLLLRMKIQGQLTIILCADCLTNTIYNDPLYDTVFTV 145
           +R+  F  L       ++ L  +    + T++LC  C       DP Y T FT+
Sbjct: 31  IRYDAFEELLNILTSEDETLQNIVSVKEKTLVLCKSCRKQNTTTDP-YQTNFTL 83


>AL132902-2|CAB81987.1|  271|Caenorhabditis elegans Hypothetical
           protein Y71A12B.2 protein.
          Length = 271

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -1

Query: 306 VRFQTFYRLSVFALYVEQLLLRMKIQGQLTIILCADCLTNTIYNDPLYDTVFTV 145
           +R+  F  L       ++ L  +    + T++LC  C       DP Y T FT+
Sbjct: 31  IRYDAFEELLNILTSEDETLQNIVSVKEKTLVLCKSCRKQNTTTDP-YQTNFTL 83


>AF003137-3|AAB93640.1|  625|Caenorhabditis elegans Hypothetical
           protein C27A12.2 protein.
          Length = 625

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 187 HHIQRPTLRHCVHCTRPTK 131
           HH ++PTL  C +C R  K
Sbjct: 443 HHRKKPTLHKCEYCGRVDK 461


>U50300-2|AAC48102.1|  335|Caenorhabditis elegans Serpentine
           receptor, class x protein2 protein.
          Length = 335

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -3

Query: 124 MMYLLVNQLQNKLIKRAGVNENDRTAQSIDTTTHTTN 14
           ++YL+ NQ   + +K +G+N  +R A S D   ++T+
Sbjct: 279 LVYLISNQEVWRNLKSSGLNIFNRAANSSDVGNNSTD 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,528,908
Number of Sequences: 27780
Number of extensions: 141973
Number of successful extensions: 348
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)