Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_D06
         (318 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   0.89 
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               22   2.1  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   2.1  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   2.7  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   4.7  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   4.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   4.7  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   6.3  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 0.89
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -3

Query: 145 TRPTKSNMMYLLVNQLQNKLIKRAGVNENDRTAQSIDTTTHT 20
           T P+ S   Y+L      K  +++   EN+   +S  ++T T
Sbjct: 197 TEPSSSTKSYVLEGPRNGKRKRKSSTIENESETESNASSTKT 238


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 237 KIQGQLTIILCADCLTNTIYNDPLYDTV 154
           K +  L  I+C   L + +Y D   DT+
Sbjct: 127 KCENGLNFIICFSKLLSDMYEDTFEDTL 154


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 225 QLTIILCADCLTNTIYN 175
           +L  I+CA CL N+I N
Sbjct: 208 ELIGIICALCLANSIKN 224


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -2

Query: 83  KACRGERERPHSAINRHDYTHN 18
           ++C  +R R +    R+D  HN
Sbjct: 251 RSCSRDRSREYKKDRRYDQLHN 272


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
          determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -2

Query: 83 KACRGERERPHSAINRHDYTHNQCE 9
          ++C  +R R +    R++  HN+ E
Sbjct: 2  RSCSRDRNREYRKDRRYEKLHNEKE 26


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
          determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -2

Query: 83 KACRGERERPHSAINRHDYTHNQCE 9
          ++C  +R R +    R++  HN+ E
Sbjct: 2  RSCSRDRNREYRKDRRYEKLHNEKE 26


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -3

Query: 187 HHIQRPTLRHCVHCTRPTKSNMMYLLVNQL 98
           HH Q  +L+H  +   PT S      VN +
Sbjct: 354 HHHQTQSLQHLHYRQPPTLSESYSSYVNSM 383


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 309 LVRFQTFYRLSVFALYVEQLLLRMK 235
           L+ ++    LSVFAL +  LL +M+
Sbjct: 316 LLYYRDSLALSVFALILTALLRKMQ 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,593
Number of Sequences: 438
Number of extensions: 1783
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)