Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_D05
(404 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000263-14|AAG00017.2| 130|Caenorhabditis elegans Ribosomal pr... 137 3e-33
U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical pr... 31 0.31
AF026202-2|AAB71242.2| 501|Caenorhabditis elegans Hypothetical ... 30 0.73
Z35637-3|CAA84689.1| 244|Caenorhabditis elegans Hypothetical pr... 29 0.96
U39654-3|AAA80406.1| 490|Caenorhabditis elegans Hypothetical pr... 29 1.7
U39654-2|AAM51505.1| 510|Caenorhabditis elegans Hypothetical pr... 29 1.7
AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory car... 27 5.1
AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synapt... 27 5.1
Z93391-2|CAB07681.1| 490|Caenorhabditis elegans Hypothetical pr... 26 9.0
AC006648-9|AAF39858.2| 306|Caenorhabditis elegans Btb and math ... 26 9.0
>AF000263-14|AAG00017.2| 130|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 17 protein.
Length = 130
Score = 137 bits (331), Expect = 3e-33
Identities = 67/115 (58%), Positives = 81/115 (70%), Gaps = 3/115 (2%)
Frame = +3
Query: 36 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 215
M RVRT YYTR+T DF NKR+C+E+AII +KPLRNKIAG+ THLMRR
Sbjct: 1 MSRVRTKTVKKASRVLIEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRR 60
Query: 216 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQD---IIEVDSDTKDMLKMLDFS 371
+ VRGISIKLQEEERERRDNY+PE+S ++ I+VD+DT DMLK F+
Sbjct: 61 IERGPVRGISIKLQEEERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGFN 115
>U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical
protein F02E8.5 protein.
Length = 578
Score = 31.1 bits (67), Expect = 0.31
Identities = 15/59 (25%), Positives = 32/59 (54%)
Frame = +3
Query: 207 MRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNING 383
+R L +V ++ ++ EE+ R +++ QDI + D+ ++ML+ + +N NG
Sbjct: 214 IRELNEQRVDFLNAEVALEEKRRNSRIQDMITSAVQDITDKDTKLEEMLRAMPDTNSNG 272
>AF026202-2|AAB71242.2| 501|Caenorhabditis elegans Hypothetical
protein C10E2.2 protein.
Length = 501
Score = 29.9 bits (64), Expect = 0.73
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 189 GFTTHLMRRLIHSQVRGISIKLQEEERE 272
GFT L RLI +++R + ++EEE E
Sbjct: 471 GFTNELSERLIRAEIRAVEDNVEEEEFE 498
>Z35637-3|CAA84689.1| 244|Caenorhabditis elegans Hypothetical
protein C03C10.4 protein.
Length = 244
Score = 29.5 bits (63), Expect = 0.96
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = +3
Query: 204 LMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQ 314
++ R ++SQ+ +SI L+ E +ER+D+Y + ALEQ
Sbjct: 183 VLTRTMNSQLELMSI-LEHEVQERKDSYSDSMRALEQ 218
>U39654-3|AAA80406.1| 490|Caenorhabditis elegans Hypothetical
protein C56G3.1a protein.
Length = 490
Score = 28.7 bits (61), Expect = 1.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 185 NFVAKRLSRNDSNFLTYPFIGI 120
N+ + +S N SN+LTYPF G+
Sbjct: 8 NYCDRGISPNASNYLTYPFDGL 29
>U39654-2|AAM51505.1| 510|Caenorhabditis elegans Hypothetical
protein C56G3.1b protein.
Length = 510
Score = 28.7 bits (61), Expect = 1.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 185 NFVAKRLSRNDSNFLTYPFIGI 120
N+ + +S N SN+LTYPF G+
Sbjct: 28 NYCDRGISPNASNYLTYPFDGL 49
>AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory
carrier membrane protein protein.
Length = 335
Score = 27.1 bits (57), Expect = 5.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 162 TKPLRNKIAGFTTHLMRRLIHSQVRGISIKLQEEERERR 278
T L NK AG L R+ + R ++++EEE +RR
Sbjct: 57 TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95
>AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synaptic
vesicle protein)homolog protein 1 protein.
Length = 335
Score = 27.1 bits (57), Expect = 5.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 162 TKPLRNKIAGFTTHLMRRLIHSQVRGISIKLQEEERERR 278
T L NK AG L R+ + R ++++EEE +RR
Sbjct: 57 TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95
>Z93391-2|CAB07681.1| 490|Caenorhabditis elegans Hypothetical
protein W04G5.4 protein.
Length = 490
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 287 IIVTPFTLLFLKLNRDSSHLGVYET 213
II TP T ++ RDS+ G Y T
Sbjct: 282 IIFTPLTNAIFRIRRDSNEAGPYST 306
>AC006648-9|AAF39858.2| 306|Caenorhabditis elegans Btb and math
domain containingprotein 3 protein.
Length = 306
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 223 TPRCEESLLSFKKRSVKGVTIMSQKYLL*N 312
T +CEE L+ F ++ +K +++KY L N
Sbjct: 235 TRKCEEFLIDFSEKPIKEKLKVAKKYQLEN 264
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,720,391
Number of Sequences: 27780
Number of extensions: 166973
Number of successful extensions: 513
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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