Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_D04
         (547 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   3.0  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    22   3.0  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    22   3.0  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    21   7.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   9.3  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 421 GTNKDISLSLRCMNIFRTD 477
           G+N    LSL C+N  RT+
Sbjct: 241 GSNTSSMLSLNCLNTGRTN 259


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 421 GTNKDISLSLRCMNIFRTD 477
           G+N    LSL C+N  RT+
Sbjct: 30  GSNTSSMLSLNCLNTGRTN 48


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 421 GTNKDISLSLRCMNIFRTD 477
           G+N    LSL C+N  RT+
Sbjct: 30  GSNTSSMLSLNCLNTGRTN 48


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 504 LDSFTGLCGERLG 542
           +D F GLCG + G
Sbjct: 356 MDDFLGLCGPKNG 368


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 461 FIHRKLNEISLLVPFEYHFSSP 396
           F+  K NEI+LLV    H  +P
Sbjct: 625 FLKVKENEITLLVATVRHVMAP 646


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,347
Number of Sequences: 336
Number of extensions: 1953
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13411456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)