Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_D04
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0191 + 1508509-1508749,1508852-1509204,1509860-1510002,151...    31   0.79 
03_05_0487 + 24838620-24838967,24840526-24840747,24840819-248411...    30   1.4  
12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-25...    27   9.8  
11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-23...    27   9.8  

>11_01_0191 +
           1508509-1508749,1508852-1509204,1509860-1510002,
           1510195-1510256,1510406-1510479,1510812-1510864,
           1511072-1513550
          Length = 1134

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 499 FRSISVQYQFGKYSYIVNLTKYLC*FRLNII 407
           FR + V Y+FG     + LTK  C F+ NII
Sbjct: 263 FRFVEVDYEFGLPKTCITLTKLDCSFQANII 293


>03_05_0487 +
           24838620-24838967,24840526-24840747,24840819-24841109,
           24841316-24841513,24841641-24841705,24841788-24841874,
           24841988-24842108,24842200-24842244,24842321-24842458,
           24842571-24842643,24842723-24842799,24842882-24842989,
           24843108-24843224,24843524-24843679,24843780-24843881,
           24844036-24844161,24844237-24844314,24844390-24844485,
           24844592-24844707,24844781-24844850,24844930-24844983,
           24845062-24845205,24845297-24845596,24845780-24846202,
           24846316-24846429
          Length = 1222

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 224 YVTNIKKKMDTTFYLLFYP 168
           YVTN + +MDT  Y+L+YP
Sbjct: 776 YVTNYQLRMDTLAYVLYYP 794


>12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-250315,
            250429-250556,250764-250862,250953-251061,251301-251380,
            251464-251691,251768-251833,251970-252086,252538-252735,
            252847-252963,253056-253115,253228-253314,253419-253502,
            253623-253757,253837-253899,253979-254083,254174-254286,
            254374-254626,254715-254851,254970-255248,255352-256354,
            256450-256935,257023-257193,257285-257470,257820-257942,
            258024-258134,258225-258395
          Length = 1708

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 418  LNIILVVLSLRNFTEKYNRRNCTNKYIS 335
            LNII+ V  L   +E Y  R C N+ IS
Sbjct: 1288 LNIIVQVDDLEEVSEYYQNRGCFNELIS 1315


>11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-234912,
            235048-235175,235383-235481,235572-235680,235920-235999,
            236083-236310,236387-236452,236589-236705,237142-237339,
            237451-237567,237660-237719,237832-237918,238023-238106,
            238233-238367,238446-238508,238588-238692,238781-238893,
            238981-239233,239322-239458,239577-239855,239958-240960,
            241054-241539,241627-241797,241890-242075,242426-242548,
            242630-242740,242834-243004
          Length = 1708

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 418  LNIILVVLSLRNFTEKYNRRNCTNKYIS 335
            LNII+ V  L   +E Y  R C N+ IS
Sbjct: 1288 LNIIVQVDDLEEVSEYYQNRGCFNELIS 1315


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,367,669
Number of Sequences: 37544
Number of extensions: 169264
Number of successful extensions: 350
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)