Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_D04
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium chann...    29   2.2  
U53141-1|AAA96103.1|  322|Caenorhabditis elegans Serpentine rece...    27   8.8  

>U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 2 protein.
          Length = 675

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/49 (30%), Positives = 19/49 (38%)
 Frame = +3

Query: 120 FVLNFFFTMITXXXXXXXXXXXXSSIHFFLNICYIVYIYLEFTYLVESI 266
           F+       I             S IHFFL I  IV+  LEF   + S+
Sbjct: 99  FIFGLVIANIILGAATNDNDSTVSKIHFFLEIFMIVFFILEFAVRLWSV 147


>U53141-1|AAA96103.1|  322|Caenorhabditis elegans Serpentine
           receptor, class x protein117 protein.
          Length = 322

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 345 LFVQFLRLYFSVKFLRDRTTKMIFKRN 425
           LF QFL L FS+ FLR     ++FK N
Sbjct: 256 LFFQFLTLSFSMVFLRALEGFIMFKMN 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,225,325
Number of Sequences: 27780
Number of extensions: 167079
Number of successful extensions: 399
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)