Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_D02
         (304 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   2.2  
SB_11387| Best HMM Match : MFS_1 (HMM E-Value=4.4e-06)                 27   2.9  
SB_58313| Best HMM Match : UPF0180 (HMM E-Value=3.4)                   26   6.7  
SB_54788| Best HMM Match : PigN (HMM E-Value=0.46)                     25   8.9  
SB_26412| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.9  

>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 189  WYLKKKLFILTYSYRFSVLTINVK*RYM*LYIGDMLNL 302
            W+ K + + L   +  + + INV   Y  LY+ D+L+L
Sbjct: 1713 WFRKPEFYTLCMVFMCTKIVINVSNSYFPLYLVDVLHL 1750


>SB_11387| Best HMM Match : MFS_1 (HMM E-Value=4.4e-06)
          Length = 815

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 54  LYHINLHDVSYLNYLCYFIFQLIMVQ*WLKFHLNF 158
           L HI +  +S L+Y   F++  +M   WL F L F
Sbjct: 452 LGHICVSFLSILSYFSLFVWLAVMRNPWLAFPLEF 486


>SB_58313| Best HMM Match : UPF0180 (HMM E-Value=3.4)
          Length = 478

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 60  HINLHDVSYLNYLCYFIFQLIMVQ*WLKFHLN 155
           HIN+ ++ Y+ Y+C  IF   M+   L+F L+
Sbjct: 142 HINVREL-YVVYICLTIFCSAMINVHLRFELD 172


>SB_54788| Best HMM Match : PigN (HMM E-Value=0.46)
          Length = 587

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 186 FWYLKKKLFILTYSYRFS 239
           FW++K  LF L +SYR+S
Sbjct: 396 FWFMKS-LFCLLWSYRYS 412


>SB_26412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +2

Query: 14  KGRFLWRDGESRLLV 58
           K RFLWRD  SR LV
Sbjct: 85  KVRFLWRDSNSRPLV 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,626,283
Number of Sequences: 59808
Number of extensions: 115504
Number of successful extensions: 173
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 364677581
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)