Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_D02
(304 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81502-4|CAB04107.2| 357|Caenorhabditis elegans Hypothetical pr... 29 0.64
AF016657-14|AAB93663.3| 495|Caenorhabditis elegans Hypothetical... 27 2.0
Z81139-6|CAH60791.2| 358|Caenorhabditis elegans Hypothetical pr... 27 2.6
Z72502-12|CAI46558.2| 303|Caenorhabditis elegans Hypothetical p... 27 2.6
Z81513-7|CAB04179.1| 319|Caenorhabditis elegans Hypothetical pr... 26 4.5
Z81139-7|CAI46624.1| 358|Caenorhabditis elegans Hypothetical pr... 26 4.5
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 26 4.5
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 26 4.5
AL021566-2|CAA16502.1| 283|Caenorhabditis elegans Hypothetical ... 25 7.9
AF099922-5|AAK21406.1| 401|Caenorhabditis elegans Hypothetical ... 25 7.9
AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated... 25 7.9
>Z81502-4|CAB04107.2| 357|Caenorhabditis elegans Hypothetical
protein F14B6.4 protein.
Length = 357
Score = 29.1 bits (62), Expect = 0.64
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +2
Query: 11 AKGRFLWRDGESRLLVPY*FTRCELFKLFV--LFHFSTNNGSVMVKISSKFLLFAHLNKT 184
A+G +++RD E R VP C++F + LF+ T + + + ++K +F +
Sbjct: 224 AEGGYVYRDKEHRWFVPDSTYGCDMFPPYTGGLFYLVTQDAAKKILNATKHRIFIPIEDA 283
Query: 185 LL 190
L+
Sbjct: 284 LI 285
>AF016657-14|AAB93663.3| 495|Caenorhabditis elegans Hypothetical
protein C16C4.13 protein.
Length = 495
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +2
Query: 83 LFKLFVLFHFSTNNGSVMVKISSKFLLFAHLNKTLL-VFKKKIVYFNI 223
LFKLFVL H N K S K + F L V K + Y++I
Sbjct: 291 LFKLFVLKHCRGRNMRYFFKFSQKLIFFKTLTGNYKNVEKFGVFYYDI 338
>Z81139-6|CAH60791.2| 358|Caenorhabditis elegans Hypothetical
protein W05H5.8 protein.
Length = 358
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 144 FHLNFYYLHI*IRRFWYLKKKLFILTYSYRFSVLTINV 257
FH N Y L + I WYL + YR + L I+V
Sbjct: 60 FHRNLYILSVPICILWYLLIAGKCIVIGYRLNFLKIDV 97
>Z72502-12|CAI46558.2| 303|Caenorhabditis elegans Hypothetical
protein C08B6.13 protein.
Length = 303
Score = 27.1 bits (57), Expect = 2.6
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +3
Query: 48 VYLYHINLHDVSYLNYLCYFIF 113
++L +N+ +Y+N+L YF+F
Sbjct: 255 IFLGWLNIFSANYINFLIYFLF 276
>Z81513-7|CAB04179.1| 319|Caenorhabditis elegans Hypothetical
protein F26D2.9 protein.
Length = 319
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/66 (22%), Positives = 32/66 (48%)
Frame = +2
Query: 26 LWRDGESRLLVPY*FTRCELFKLFVLFHFSTNNGSVMVKISSKFLLFAHLNKTLLVFKKK 205
+W+ L P +T+ E + L F + +NG + V I+ + +LF + +L+
Sbjct: 200 IWQPSPDCLDFPSNYTQIEYYWLATDFSGNLSNGIIEVLINVEGILFKFIPSIILLAVTL 259
Query: 206 IVYFNI 223
++ F +
Sbjct: 260 LLVFEL 265
>Z81139-7|CAI46624.1| 358|Caenorhabditis elegans Hypothetical
protein W05H5.5 protein.
Length = 358
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 144 FHLNFYYLHI*IRRFWYLKKKLFILTYSYRFSVLTINV 257
FH N Y L I + WY+ ++ +YR L I++
Sbjct: 60 FHRNLYILSIPVFFLWYVLIAGKLIIIAYRLDFLKIDI 97
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 198 LNTKSVLFKCANNKNLDEILTITEPLLVEK 109
LN L KC N+ NL E + P +VEK
Sbjct: 831 LNIVMQLRKCCNHPNLFEPRPVVAPFVVEK 860
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 198 LNTKSVLFKCANNKNLDEILTITEPLLVEK 109
LN L KC N+ NL E + P +VEK
Sbjct: 831 LNIVMQLRKCCNHPNLFEPRPVVAPFVVEK 860
>AL021566-2|CAA16502.1| 283|Caenorhabditis elegans Hypothetical
protein F08E10.2 protein.
Length = 283
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 144 FHLNFYYLHI*IRRFWYLKKKLFILTYSYRFSV 242
F+LNFY LH KK +L Y +RFSV
Sbjct: 20 FYLNFYLLHSIFVSKKLAKKPDLVLIY-FRFSV 51
>AF099922-5|AAK21406.1| 401|Caenorhabditis elegans Hypothetical
protein F56F11.2 protein.
Length = 401
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 138 LKFHLNFYYLHI*IRRFWYLKKKLFILTYSYRFSVLT 248
+K L FY + I + W+ KL I SY FS L+
Sbjct: 30 VKHVLEFYAIDIRLPYHWHQIAKLNISEMSYTFSTLS 66
>AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated
ion channel protein 1 protein.
Length = 371
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -2
Query: 231 YKSMLK*TIFFLNTKSVLFKCANNKNLDEILTI 133
Y +++ FF+N S++ C N +N+ E +T+
Sbjct: 237 YVTLVMVPAFFINFLSIIALCLNIENVGEKITV 269
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,911,229
Number of Sequences: 27780
Number of extensions: 98549
Number of successful extensions: 204
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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