Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_D02
         (304 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   3.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   7.7  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    20   7.7  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 249 LLEH*TYKSMLK*TIFFLNTKSVLFK 172
           LLE    K+M +   FF N KSV F+
Sbjct: 109 LLEVDWLKNMWRPDSFFKNAKSVTFQ 134


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +3

Query: 189 WYLKKKLFILTYSYRFSVLTI 251
           W     LF++ YSY F +  +
Sbjct: 223 WVYFVPLFLIIYSYWFIIQAV 243


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +3

Query: 189 WYLKKKLFILTYSYRFSVLTI 251
           W     LF++ YSY F +  +
Sbjct: 99  WVYFVPLFLIIYSYWFIIQAV 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,629
Number of Sequences: 438
Number of extensions: 1460
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)