Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_D01
(551 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0347 - 29440541-29440664,29440908-29441020,29441522-294416... 196 7e-51
12_02_0695 + 22220054-22220056,22221226-22221276,22221415-222215... 192 2e-49
07_03_0445 - 18281715-18281832,18282274-18282505,18283486-182835... 192 2e-49
10_08_0945 - 21738643-21738760,21740056-21740287,21740582-217406... 192 2e-49
03_01_0658 + 4818401-4818540,4818605-4819201,4819694-4819949,482... 31 0.81
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 30 1.1
01_06_1363 - 36681605-36681789,36681875-36681908,36682017-366821... 29 3.3
03_02_0207 - 6411324-6412895 28 5.7
10_08_1046 + 22542074-22544749,22544837-22545544 27 7.5
01_06_0986 - 33602714-33602741,33603037-33603146,33603401-336036... 27 7.5
04_03_0320 - 14316934-14318550 27 10.0
>05_07_0347 -
29440541-29440664,29440908-29441020,29441522-29441689,
29442341-29442391,29442518-29442555,29442885-29442978
Length = 195
Score = 196 bits (479), Expect = 7e-51
Identities = 88/146 (60%), Positives = 111/146 (76%)
Frame = +1
Query: 112 EIMADQRERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLAS 291
E A + ERTF+ +KPDGVQRGL+ I+ RFE+KGFKLV +K V PS+E Q+HY DL
Sbjct: 39 EAHAAEMERTFIAIKPDGVQRGLISEILSRFERKGFKLVAIKLVVPSKEFAQKHYHDLKD 98
Query: 292 RPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNII 471
RPFF GL ++SSGPV+ MVWEG V+K GR+++GAT+P S+PGTIRGDL + VGRNII
Sbjct: 99 RPFFNGLCDFLSSGPVLAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNII 158
Query: 472 HGSDSVESANKEIALWFTEKEVVGWT 549
HGSD E+A EI LWF +E+V +T
Sbjct: 159 HGSDGPETAKAEIGLWFEPRELVSYT 184
>12_02_0695 +
22220054-22220056,22221226-22221276,22221415-22221501,
22222064-22222144,22222241-22222353,22222482-22222531,
22222790-22222857
Length = 150
Score = 192 bits (468), Expect = 2e-49
Identities = 82/138 (59%), Positives = 108/138 (78%)
Frame = +1
Query: 133 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 312
E++++M+KPDGVQRGLVG II RFEKKGF L GLK ++L Q+HY DL +PFFPGL
Sbjct: 3 EQSYIMIKPDGVQRGLVGEIISRFEKKGFVLKGLKLFQCPKDLAQEHYKDLKEKPFFPGL 62
Query: 313 VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVE 492
++Y++SGPVV M WEG VV + R+++GATNP ++PGTIRGDL +Q GRN++HGSDS +
Sbjct: 63 IEYITSGPVVCMAWEGNGVVASARKLIGATNPLQAEPGTIRGDLAVQTGRNVVHGSDSPD 122
Query: 493 SANKEIALWFTEKEVVGW 546
+ +EIALWF E E+ W
Sbjct: 123 NGKREIALWFKEGELCEW 140
>07_03_0445 -
18281715-18281832,18282274-18282505,18283486-18283534,
18283733-18283783
Length = 149
Score = 192 bits (468), Expect = 2e-49
Identities = 84/132 (63%), Positives = 107/132 (81%)
Frame = +1
Query: 133 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 312
E++F+M+KPDGVQRGL+G II RFEKKGF L G+KF+ QQHY+DL+ +PFFPGL
Sbjct: 2 EQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGL 61
Query: 313 VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVE 492
V+Y+ SGPVV MVWEG +VV TGR+++GAT P ++ PGTIR D ++VGRN+IHGSDSV+
Sbjct: 62 VEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSVD 121
Query: 493 SANKEIALWFTE 528
+ KEIALWF E
Sbjct: 122 NGKKEIALWFPE 133
>10_08_0945 -
21738643-21738760,21740056-21740287,21740582-21740630,
21740720-21740776
Length = 151
Score = 192 bits (467), Expect = 2e-49
Identities = 83/132 (62%), Positives = 107/132 (81%)
Frame = +1
Query: 133 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 312
E+TF+M+KPDGVQRGL+G +I RFEKKGF L +K + + ++HY+DL+S+PFF GL
Sbjct: 4 EQTFIMIKPDGVQRGLIGEVIGRFEKKGFYLKAMKLINVEKSFAEKHYADLSSKPFFGGL 63
Query: 313 VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVE 492
V+Y+ SGPVV MVWEG VV TGR+++GATNP ++PGTIRGD + +GRN+IHGSDSVE
Sbjct: 64 VEYIVSGPVVAMVWEGKQVVSTGRKLVGATNPLAAEPGTIRGDFAVDIGRNVIHGSDSVE 123
Query: 493 SANKEIALWFTE 528
+A KEIALWF E
Sbjct: 124 NARKEIALWFPE 135
>03_01_0658 + 4818401-4818540,4818605-4819201,4819694-4819949,
4820038-4820723,4821009-4821147,4821378-4821514,
4821805-4822077,4822175-4822382,4822660-4822731,
4823230-4823460,4824269-4824532,4825127-4825268,
4825355-4825467
Length = 1085
Score = 30.7 bits (66), Expect = 0.81
Identities = 19/65 (29%), Positives = 35/65 (53%)
Frame = +1
Query: 346 MVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVESANKEIALWFT 525
M+WE L +VK +++ + + T+ D CI G +++ DS N++IA +
Sbjct: 995 MIWESLGIVKENQELHKGSVEIEDDFATL-ADKCIFPG-DVLWVKDSEIYENRDIADEIS 1052
Query: 526 EKEVV 540
E++VV
Sbjct: 1053 EQKVV 1057
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Frame = +3
Query: 240 RLALGRVAAATLQ*LSVPP------VFPWSCKIHEFWT-GCSHGLGGPE 365
RLALG V LQ ++PP PW H+FW G G PE
Sbjct: 442 RLALGSVVDVVLQNTAIPPPNGRSETHPWHLHGHDFWVLGYGEGKFVPE 490
>01_06_1363 -
36681605-36681789,36681875-36681908,36682017-36682154,
36682578-36682724,36682821-36682865,36683043-36683331,
36683443-36683669,36684109-36684528
Length = 494
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = -1
Query: 509 ISLLADSTLSEPWMILRPTWIHKSPRMVPG*ESAGLVAPSI*RPVLTTFRPSQTMGTTG 333
++L + +T PW R W+ S R++ G + G+ PS+ VL F ++ G
Sbjct: 171 VALWSLATFLSPWAAARSLWLFLSTRVLLG-MAEGVALPSMNNMVLRWFPRTERSSAVG 228
>03_02_0207 - 6411324-6412895
Length = 523
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +1
Query: 112 EIMADQRERTFLMVKPDGVQRGLV---GTIIERFEKKGF 219
E+++ Q RTF++ +P GV RG++ +ERF + GF
Sbjct: 64 EVLSRQPTRTFVLRRPGGV-RGVITANPANVERFLRSGF 101
>10_08_1046 + 22542074-22544749,22544837-22545544
Length = 1127
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +1
Query: 133 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFP 306
ER +VK +G G FE KG G +WP ++ + H +L S+P+ P
Sbjct: 195 ERRLSLVKQNGGAPGEFDHNRWLFETKGTYGYG-NAIWPEDDGVAGHPKELMSKPWRP 251
>01_06_0986 -
33602714-33602741,33603037-33603146,33603401-33603601,
33604605-33604697,33604937-33605182,33606007-33606372,
33606459-33606599,33607170-33607526
Length = 513
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 286 ASRPFFPGLVKYMSSGPVVP 345
ASRPF PGL++ PV+P
Sbjct: 22 ASRPFLPGLLEAALRAPVLP 41
>04_03_0320 - 14316934-14318550
Length = 538
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -2
Query: 343 EQPVQNSCILQDQGKTGGTLSHCNVA-AATLPRARR 239
++P QN C+ G GG + C+ +AT P R
Sbjct: 449 DKPRQNCCVRSPDGLVGGVVMTCHAGWSATSPSCSR 484
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,137,009
Number of Sequences: 37544
Number of extensions: 321405
Number of successful extensions: 790
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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