Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_C24
(458 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 152 3e-38
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 148 5e-37
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 28 0.79
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch... 25 4.2
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 25 5.6
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 25 7.3
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S... 25 7.3
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 25 7.3
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 152 bits (368), Expect = 3e-38
Identities = 78/150 (52%), Positives = 105/150 (70%), Gaps = 2/150 (1%)
Frame = +1
Query: 10 MGIDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPP 189
MGIDI H RK +R++ S++V T+++FN+ IL+RLF S+ NRPP
Sbjct: 1 MGIDIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60
Query: 190 ISLSRLAR--HMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGG 363
IS+S++A K + EG V+VGTV++D RL TVPK++VAAL T+ ARARIL AGG
Sbjct: 61 ISISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGG 120
Query: 364 EILTFDQLALRAPTGRKTVLVQGRRNAREA 453
E+LT DQLALRAPTG TVL++G+++AREA
Sbjct: 121 EVLTLDQLALRAPTGSNTVLLRGKKHAREA 150
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 148 bits (358), Expect = 5e-37
Identities = 75/150 (50%), Positives = 104/150 (69%), Gaps = 2/150 (1%)
Frame = +1
Query: 10 MGIDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPP 189
MGIDI H +K +R++ S++V T+++FN+ IL+RLF S+ NRPP
Sbjct: 1 MGIDIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60
Query: 190 ISLSRLAR--HMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGG 363
IS+S++A K + + VVVGTV++D R+ TVPK+++AAL T+ ARARIL AGG
Sbjct: 61 ISISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGG 120
Query: 364 EILTFDQLALRAPTGRKTVLVQGRRNAREA 453
E+LT DQLALRAPTG TVLV+G+++AREA
Sbjct: 121 EVLTLDQLALRAPTGSNTVLVRGKKHAREA 150
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 27.9 bits (59), Expect = 0.79
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 180 PTSDFFVPFGTPHEEAYTRGFDRCSR 257
P +D F+PF TP +AY + R R
Sbjct: 209 PQTDNFIPFLTPKRQAYGQSSSRADR 234
>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 25.4 bits (53), Expect = 4.2
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = +1
Query: 184 PPISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGG 363
PP+ S L + T + L ++ + + R+ T+PK+ + L + +R +L +GG
Sbjct: 206 PPVDESFLMGSISSDTVDTLHTYLIKALQD--RVLTIPKLCSSNLDCSHYSRVCVLYSGG 263
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 25.0 bits (52), Expect = 5.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 106 CTVLPIVSSTHPET*LRCAELSCRVYD*CRYPSLV 2
C+V I STHPE A+ +C R+P ++
Sbjct: 48 CSVFSISLSTHPEW-AELADRACETMKTLRHPCII 81
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 115 PSICTVLPIVSSTHPET*LRCAELSCRVYD 26
P +CTVLPI+ + + + C++YD
Sbjct: 150 PHLCTVLPIMIPVYKWWQVPYFFVGCKIYD 179
>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -1
Query: 128 FVRLAKYLYSFTN 90
F LAKYLYSFT+
Sbjct: 114 FPELAKYLYSFTD 126
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 24.6 bits (51), Expect = 7.3
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +1
Query: 274 DVRLYTVPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGRKTVLVQGRRNARE 450
D L VP + VT R + GG + R+ T R+T+L G RN+R+
Sbjct: 61 DANLSNVPTINSIPSPVT---RPPVAVGGGIFYGARRTRNRSQTQRRTLLENGFRNSRK 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,826,759
Number of Sequences: 5004
Number of extensions: 33713
Number of successful extensions: 89
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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