Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C23
         (453 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   198   2e-51
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    31   0.30 
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z74036-4|CAE17849.1|  112|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical pr...    28   2.8  
AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP ...    28   2.8  
AF078789-1|AAK21515.1|  392|Caenorhabditis elegans Hypothetical ...    28   2.8  
AL132943-5|CAB81977.1|  367|Caenorhabditis elegans Hypothetical ...    28   3.7  
AC006762-6|ABJ99063.1|  547|Caenorhabditis elegans Hypothetical ...    27   6.4  
AC006762-5|AAF60553.2|  684|Caenorhabditis elegans Hypothetical ...    27   6.4  
Z81508-5|CAB04138.1|  357|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z72512-1|CAA96663.2|  326|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  198 bits (482), Expect = 2e-51
 Identities = 87/144 (60%), Positives = 113/144 (78%)
 Frame = +2

Query: 20  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 199
           MS+L+LQKRLA++V++CGK +VWLDPNE++EI+  NSRQ+IR+++ DGL+I+KPV VHSR
Sbjct: 1   MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60

Query: 200 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 379
            R R+  EARRKGRH G+GKRRGTANARMP+K LW                AKK+D+HLY
Sbjct: 61  FRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLY 120

Query: 380 HSLYMKAKGNVFKNKRVLMEYIHR 451
           H LY++AKGN FKNK+ L+EYI +
Sbjct: 121 HELYLRAKGNNFKNKKNLIEYIFK 144


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 116  ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 250
            ++T+S +N+R ++ D   +K  V  H     R ++E R+K R  G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 128 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 241
           S +N+RKMIK  G V+ +   ++  A +R   EAR   R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208


>Z74036-4|CAE17849.1|  112|Caenorhabditis elegans Hypothetical
           protein F55C10.5 protein.
          Length = 112

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +2

Query: 5   EDRARMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNI 142
           EDR+R+ ++K  K   A + +  K + W++  E+ ++ N N   N+
Sbjct: 18  EDRSRVLTMKYGKHQMALIRKRMKVENWIE-TEVTKLFNGNETNNV 62


>Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical protein
            ZK512.3 protein.
          Length = 1418

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 229  ARLCVFANTSAGMDSNWFLDDQTILDHLTDVLSGISISD 113
            A+  V  ++   + + W L++ +  +HLT +L  I ISD
Sbjct: 1282 AKCQVLVDSQKNIPNEWHLENSSKDEHLTSILKMIGISD 1320


>AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP
            homologous cationchannel protein protein.
          Length = 1027

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 229  ARLCVFANTSAGMDSNWFLDDQTILDHLTDVLSGISISD 113
            A+  V  ++   + + W L++ +  +HLT +L  I ISD
Sbjct: 891  AKCQVLVDSQKNIPNEWHLENSSKDEHLTSILKMIGISD 929


>AF078789-1|AAK21515.1|  392|Caenorhabditis elegans Hypothetical
           protein Y44E3B.2 protein.
          Length = 392

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 410 HYPSPSCTRNGRDACLSSSLFC 345
           +YP P+CTR   D C S  LFC
Sbjct: 306 YYPRPTCTRENPD-CDSPYLFC 326


>AL132943-5|CAB81977.1|  367|Caenorhabditis elegans Hypothetical
           protein Y116F11B.8 protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -3

Query: 328 TEHPLPLNP*FFLWHSSISCTSPLTKATVTSFPARLCVFANTSAGMDSNWFLDDQT 161
           TE    L P    W+S  + +   T ATVTS       F++    +DS+   D  T
Sbjct: 238 TEPASTLGPVVIPWNSPGTSSKATTSATVTSLVLGPTTFSSAPQALDSSLAADPST 293


>AC006762-6|ABJ99063.1|  547|Caenorhabditis elegans Hypothetical
           protein Y42G9A.6b protein.
          Length = 547

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -1

Query: 240 RPFLRASVFLRTRAREWTATGFLMTRPSLIILRMFCLELVLAI 112
           RP   AS F + RA  W A+  ++  P+L+ ++ F   +++AI
Sbjct: 262 RPRFGASFFQQIRALTWRASKTVLREPTLLKVQTF-QSIIIAI 303


>AC006762-5|AAF60553.2|  684|Caenorhabditis elegans Hypothetical
           protein Y42G9A.6a protein.
          Length = 684

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -1

Query: 240 RPFLRASVFLRTRAREWTATGFLMTRPSLIILRMFCLELVLAI 112
           RP   AS F + RA  W A+  ++  P+L+ ++ F   +++AI
Sbjct: 399 RPRFGASFFQQIRALTWRASKTVLREPTLLKVQTF-QSIIIAI 440


>Z81508-5|CAB04138.1|  357|Caenorhabditis elegans Hypothetical
           protein F20E11.7 protein.
          Length = 357

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 44  RLAASVMRCGKKKVWLDPNEI 106
           ++A + + CG  K+W DPN I
Sbjct: 171 QIAETSVTCGDDKIWQDPNGI 191


>Z72512-1|CAA96663.2|  326|Caenorhabditis elegans Hypothetical
           protein R07B5.3 protein.
          Length = 326

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -1

Query: 174 LMTRPSLIILRMFCLELVLAISLISFGSSHTFFLPHRITEAASLFCNFRELIL 16
           L+  PS  IL  FC  L  A S++    +  +F  +       LFC+ R LIL
Sbjct: 86  LVRIPSTTILTYFCATLDPAESIVPLLVAVYYFSNYSSQLYTVLFCSTRTLIL 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,478,733
Number of Sequences: 27780
Number of extensions: 201850
Number of successful extensions: 604
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)