Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C22
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo...    27   1.5  
SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces po...    27   2.6  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    26   3.4  
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo...    26   3.4  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    26   4.5  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   6.0  

>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
           YakC|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +2

Query: 482 PEYNPSNYYHDIGIITLFESVTYTNRVQP 568
           P Y   N+Y ++ ++T  E +   N + P
Sbjct: 235 PRYQKENFYKNLELVTKIEKIATANNITP 263


>SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 482 PEYNPSNYYHDIGIITLFESVTYTNRVQPA 571
           PEY     + D+G++TL    +Y    +P+
Sbjct: 297 PEYRNGGLFVDLGVLTLRPEFSYATEYEPS 326


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +2

Query: 239 LEGQWPWQVALYE-TKITDSKFMCGGTLVTHRHIITAAHCTTHEHSKRLKNTNSLIVFL 412
           LEG+W   + L E  ++ D+K       V HR         TH H   L N   L+ F+
Sbjct: 298 LEGRWNMYMLLNEYQELADTK------KVPHRDFYNVRKVDTHVHHSALANQKHLLRFI 350


>SPAC12B10.07 |acp1||F-actin capping protein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
 Frame = +2

Query: 419 HNLQTTTFGV-----QIKFVEQVLIHPEYNPSNYYH 511
           H L   TFG+     +++    VL+  +YNP NY++
Sbjct: 117 HYLSDVTFGIIKKSDEVESFTIVLVSSKYNPKNYWN 152


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 245 GQWPWQVALYETKITDSKFMCGGTLVTHRHIITAAHCTTHE 367
           GQ   QV +++   TD+ F    T + H+H +++  C   E
Sbjct: 34  GQCSGQVMVFDVS-TDNHFTLIQTFIAHKHSVSSIVCLPFE 73


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 380  LKNTNSLIVFLGKHNLQTTTFGVQIKFVEQ 469
            LKN N L+  +  +N QTT    +IK++E+
Sbjct: 941  LKNRNLLMDDISSYNKQTTKLQEKIKWLER 970


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,198,811
Number of Sequences: 5004
Number of extensions: 40598
Number of successful extensions: 106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)