Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C22
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,813...    29   2.7  
06_03_1303 + 29180837-29181205,29181289-29181306,29181337-291816...    28   6.1  
10_08_0179 + 15483854-15483968,15484196-15484302,15485211-154853...    27   8.1  
04_01_0129 + 1408408-1409055,1409107-1410013,1410145-1410294,141...    27   8.1  

>03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,
            8136560-8136655,8136746-8136874,8136947-8137123,
            8137256-8137366,8138592-8138792,8139022-8139186,
            8139293-8139527,8139618-8139745,8139833-8139928,
            8140017-8140112,8140252-8140325,8140393-8140462,
            8140556-8140665,8140753-8140906,8141040-8141155,
            8141259-8141379,8141464-8141641,8142331-8142489,
            8142619-8142732,8142821-8143000,8143098-8143177
          Length = 1117

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +2

Query: 197  VINESPLVVLGTKTLEGQWPWQVALYETKITDSKFMCGGTLVTHRHIITAAHCTTHEHSK 376
            V++E+ + +  T  LE    W V    + IT + F C   L+ +   + A  C  +  S 
Sbjct: 974  VVHETQIAIYETTKLEPVKQWPVRENSSPITHAMFSCDSQLI-YASFLDATVCIFNASSL 1032

Query: 377  RLK 385
            RL+
Sbjct: 1033 RLQ 1035


>06_03_1303 +
           29180837-29181205,29181289-29181306,29181337-29181622,
           29185008-29186284,29186499-29187005
          Length = 818

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 344 AAHCTTHEHSKRLKNTNSLIVFL 412
           A HC  ++H++RLK+   LI F+
Sbjct: 765 AVHCGGYQHAERLKDGGELITFV 787


>10_08_0179 +
           15483854-15483968,15484196-15484302,15485211-15485304,
           15485537-15485637,15486143-15486199,15486614-15486761,
           15486982-15487049
          Length = 229

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 429 CRLCLPKNTIKLFVFFKRFECS 364
           C++C+  +TI LFV  +RF C+
Sbjct: 174 CQVCVLNHTISLFVNSQRFACN 195


>04_01_0129 +
           1408408-1409055,1409107-1410013,1410145-1410294,
           1419174-1419634,1419683-1419999,1420114-1420477
          Length = 948

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
 Frame = +2

Query: 311 GTLVTHRHIITAAHCTTHEHSKRLKNTNSLIVFLGKHNLQTTTFGVQIKFVEQVLIHPEY 490
           G L  HR   T+ +    +  K+L  T   + +  K+ +    FG  +K V+ +L     
Sbjct: 142 GMLEDHR---TSLYPGCEQGHKKLDTTLEFLQWKAKNGVSDKAFGDLLKLVKNILPEGNK 198

Query: 491 NPSNYYHDIGIITLFESVTYTN-RVQPAC 574
            P   Y    I+   E   Y N    P C
Sbjct: 199 LPETTYEAKKIVCPLELEEYENLEACPVC 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,045,583
Number of Sequences: 37544
Number of extensions: 257098
Number of successful extensions: 591
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)