Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C21
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    28   0.70 
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    28   0.70 
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   0.93 
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    26   2.2  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    26   2.2  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    25   5.0  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    25   6.6  
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    25   6.6  
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   8.7  

>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 27.9 bits (59), Expect = 0.70
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = -1

Query: 337 LINLHSGLGVDFRSDTFPCAHVLGFKL 257
           +INL+SGLG+D +SD +    VL +KL
Sbjct: 217 MINLYSGLGIDEKSDMWALG-VLLYKL 242


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 27.9 bits (59), Expect = 0.70
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 111 IPCVWLAISEIQNYVEQESRP 49
           IPC W+ I   Q Y++Q S P
Sbjct: 475 IPCDWVYIQWAQTYIKQSSEP 495


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -2

Query: 408 LMSYTKLRMSLITASFWICTILFISSIFTLVSASIFA 298
           +M  T + +  +  ++W+ T++F    FT++SA  F+
Sbjct: 702 IMQLTMMGLMSLRKAYWLSTVIFPLLCFTVISAYNFS 738


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 337 LINLHSGLGVDFRSDTFPCAHVLGFKL 257
           +IN+H G G+D +SD +    VL +KL
Sbjct: 221 MINVHKGFGIDEKSDIWALG-VLFYKL 246


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 111 SNNYWLLKNAPPKRSQRRGSEKRNA*SKLRKRPKMR*KSTDKN 239
           +N + LLK +P ++S+        + SKL+ R K     T+KN
Sbjct: 646 ANQFDLLKVSPQQKSEVPPKRNELSQSKLKNRKKKENSETNKN 688


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 415 FRLDVIHQVEDVFDNSL-FLDLHHFVHLINLH 323
           F ++ I+ + D  +N    +D  HF+ LI+LH
Sbjct: 628 FDMEFINYLSDFTNNPREVIDYQHFIELIDLH 659


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 405 MSYTKLRMSLITASFWICTILFIS 334
           +S  K   SLI  S WI  ILF+S
Sbjct: 504 LSEIKQYSSLILISLWISLILFVS 527


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 275 MGTREGVAAKIDAETRVKIDEMNKMVQIQKE 367
           M TR+G A  +D    V  +EM+K++Q  +E
Sbjct: 420 MSTRKGKAVFLDDIMEVAKEEMHKVMQKNEE 450


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 81  FRKWRARHRGSNNYWLLKNAPPKRSQRRGSEKRNA*SKLRK 203
           + +W    +G  +  ++KN  P + +RR S++ +   K RK
Sbjct: 24  YLEWERSQQGQISESVVKNHSPSKRKRRPSKEPSLSPKRRK 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,424,603
Number of Sequences: 5004
Number of extensions: 22034
Number of successful extensions: 94
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)