Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_C21
(433 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1047 - 30408962-30409105,30409204-30409304,30409733-30409820 31 0.30
03_02_0829 - 11599665-11600364,11600853-11601076,11601786-116020... 31 0.53
04_04_1503 + 34031540-34031562,34031682-34032212,34032417-340325... 29 2.1
04_04_0430 - 25153572-25154060 28 3.7
01_06_1556 - 38222071-38222708,38222795-38222822,38222950-382230... 27 4.9
06_03_0834 - 25206825-25207075,25207326-25207424,25207531-252082... 27 6.5
04_04_1229 - 31906854-31907300,31907986-31908181,31908631-319087... 27 6.5
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157... 27 6.5
02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599 27 6.5
01_01_0602 - 4484972-4485450,4485949-4485997,4486108-4486237,448... 27 6.5
05_01_0466 + 3702771-3703016,3703133-3703196,3703757-3704055,370... 27 8.6
>04_04_1047 - 30408962-30409105,30409204-30409304,30409733-30409820
Length = 110
Score = 31.5 bits (68), Expect = 0.30
Identities = 23/101 (22%), Positives = 37/101 (36%)
Frame = +2
Query: 107 GIQQLLAAEKRAAEKVSXXXXXXXXXXXXXXXXXXDEVXXXXXXXXXXXXXXXAKHMGTR 286
GIQQLLAAE+ A + V+ E+ A+ G
Sbjct: 9 GIQQLLAAEQEAQQIVNAARAAKSARLRQAKEEAEREIAEYRAQMEAEFQRKVAESSGDS 68
Query: 287 EGVAAKIDAETRVKIDEMNKMVQIQKEAVIKDILNLVYDIK 409
+++ ET KI ++ + VI+ +L V +K
Sbjct: 69 GANVKRLEQETAEKIAQLKQQAASISPEVIQMLLRHVTTVK 109
>03_02_0829 -
11599665-11600364,11600853-11601076,11601786-11602000,
11602300-11602377,11602593-11603907
Length = 843
Score = 30.7 bits (66), Expect = 0.53
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +3
Query: 81 FRKWRARHRG---SNNYWLLKNAPPKRSQRRGSEKRNA*SKLRK 203
F KW A HR S N WLLK P R ++ K+ A + + K
Sbjct: 664 FLKWIAYHRSYLHSLNSWLLKCVKPLRGKKSSRRKKEADTPITK 707
>04_04_1503 +
34031540-34031562,34031682-34032212,34032417-34032571,
34032929-34033020,34033916-34034419
Length = 434
Score = 28.7 bits (61), Expect = 2.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 93 RARHRGSNNYWLLKNAPPKRSQRR 164
R++ RG N+ W+ PP+R+ RR
Sbjct: 315 RSKTRGRNDRWMTIRGPPRRATRR 338
>04_04_0430 - 25153572-25154060
Length = 162
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 123 WLLKNAP-PKRSQRRGSEKRNA*SKLRKRPKMR*KSTDKNVRGNSK 257
W K+AP PK+ +K N SK +K+P+ K GN K
Sbjct: 42 WPSKSAPAPKKKNDDKKKKNNNNSKNKKKPQEAGKGAANAAAGNKK 87
>01_06_1556 -
38222071-38222708,38222795-38222822,38222950-38223070,
38223206-38223318,38223424-38223506,38223868-38223930,
38224100-38224254,38224411-38224580,38225101-38225189,
38225304-38225496,38225655-38225779,38226069-38226475,
38226855-38226919,38227414-38227692,38227772-38227845,
38228241-38228292,38228366-38228473,38228871-38228972,
38229100-38229173,38229262-38229435,38229667-38229771,
38229867-38229977,38230364-38230487
Length = 1150
Score = 27.5 bits (58), Expect = 4.9
Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Frame = -2
Query: 117 CWIPCVWLAISE---IQNYVEQESRPR 46
CW+P WL +S+ +Q+Y+ + P+
Sbjct: 400 CWVPLEWLHVSDPLRVQSYLNKNCLPK 426
>06_03_0834 -
25206825-25207075,25207326-25207424,25207531-25208285,
25209073-25209388,25210472-25210514
Length = 487
Score = 27.1 bits (57), Expect = 6.5
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = +3
Query: 141 PPKRSQRRGSEKRNA*SKLRKRPKMR*KSTDKNVRGNSKSLKPSTWAHGKVSLRKSTPRP 320
PP Q GSEK + K ++R +R +S N S+ P W + L P P
Sbjct: 9 PPLLRQAAGSEKASLLCKPKQRASVRRRSFTARASSNPVSI-PKQWYNLVADLPVKPPPP 67
>04_04_1229 -
31906854-31907300,31907986-31908181,31908631-31908756,
31909962-31910329,31910680-31910835,31910968-31911168,
31911230-31911375,31911439-31911865,31912527-31912627,
31913197-31913254
Length = 741
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -1
Query: 340 HLINLHSGLGVD-FRSDTFPCAHV 272
H+IN HSG+GV F+ F C ++
Sbjct: 131 HIINNHSGIGVKVFKLQLFACPNI 154
>04_03_0867 -
20414999-20415160,20415255-20415384,20415515-20415702,
20415967-20416001,20416363-20416579,20416737-20416820,
20417609-20417875,20417954-20418061,20418163-20418249,
20418629-20419399
Length = 682
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 111 IPCVWLAISEIQNYVEQESRPRHESI 34
IPC+WL I+ + + Q S+ H S+
Sbjct: 288 IPCMWLVIASLGRRLRQISKEAHISL 313
>02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599
Length = 99
Score = 27.1 bits (57), Expect = 6.5
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 132 KNAPPKRSQR-RGSEKRNA*SKLRKRPKMR*KSTDKNVRGNSKSLKPSTWAHGKVSLRKS 308
KN P KR +R + SEK A + + KM + +K +RG K L + A + + S
Sbjct: 27 KNEPKKRQKRSKNSEKEKAVAPSSSK-KMDREELEKTIRGFLKELDSTEAAPMRTTGCTS 85
Query: 309 TPRP 320
RP
Sbjct: 86 AMRP 89
>01_01_0602 -
4484972-4485450,4485949-4485997,4486108-4486237,
4486636-4486778,4486819-4486877,4487167-4487200,
4487489-4487629,4487719-4487907,4488027-4488122,
4488163-4488225,4488588-4489097
Length = 630
Score = 27.1 bits (57), Expect = 6.5
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +3
Query: 189 SKLRKRPKMR*KSTDKNVRGNSKSLKPSTWAHGKVSLRKSTPRPE*R 329
S +R +P+ KST +S KPS + + KS PRPE R
Sbjct: 557 SPIRSQPRS--KSTSSGKAKPVRSAKPSKSSSPSPKVAKSRPRPEGR 601
>05_01_0466 +
3702771-3703016,3703133-3703196,3703757-3704055,
3704666-3704881,3705216-3705422,3705697-3705789,
3706098-3706196,3706300-3706329,3706885-3706938,
3707533-3707586,3707658-3707735,3707927-3708018,
3708093-3708150,3708248-3708322,3708930-3708977,
3709131-3709228,3709446-3709521,3709659-3709721,
3709810-3709901,3710207-3710275,3710410-3710473,
3710545-3710610,3710700-3710777
Length = 772
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -1
Query: 430 IVDVEFRLDVIHQVEDVFDNSLFLDLHHFV 341
I DV + H ED SL LDL H+V
Sbjct: 189 IPDVSINVAPAHGTEDTSTESLELDLEHYV 218
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,361,115
Number of Sequences: 37544
Number of extensions: 146603
Number of successful extensions: 394
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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