Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C21
         (433 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    25   0.48 
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   7.8  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   7.8  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 24.6 bits (51), Expect = 0.48
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 136 FFSSQ*LLDPLCLARHFRNTKLCRARIKTETRINK 32
           FF S  + D +      RN K+C A +KT  +I++
Sbjct: 253 FFESCGVADLIATCYGGRNRKICEAFVKTGKKISE 287


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 290 GVAAKIDAETRVKIDEMNKMVQIQ 361
           GVAA I   T   I+ +  ++Q+Q
Sbjct: 18  GVAAAISKTTVAPIERVKLLLQVQ 41


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 290 GVAAKIDAETRVKIDEMNKMVQIQ 361
           GVAA I   T   I+ +  ++Q+Q
Sbjct: 18  GVAAAISKTTVAPIERVKLLLQVQ 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,662
Number of Sequences: 438
Number of extensions: 1537
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)