Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C20
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    28   0.99 
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    27   2.3  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   5.3  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    25   7.0  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   9.2  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   9.2  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   9.2  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     25   9.2  

>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1242

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 8/29 (27%), Positives = 21/29 (72%)
 Frame = +3

Query: 432  LIASDFFAFAVGFSAL*FSLWPVYQTLPF 518
            ++  DF+A+A+GF ++ F ++ ++ ++ F
Sbjct: 998  VVKHDFYAYAIGFYSISFPMYAIHASVKF 1026


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -1

Query: 424 YAIVLKWPNVDLLRLADVTSYLHSGNYKVEML 329
           Y  V  W N +LLR  ++++ +H+ ++  ++L
Sbjct: 95  YVCVHDWSNSELLRTMEISTRVHAASFSGKLL 126


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
 Frame = -1

Query: 496 GQRLNYNAEKPTAKAKKSDAIRAIYAIVLKWPNVDLLRLADVTSYLHSGNYKVEM--LGN 323
           G RL         +  K   +  +Y  ++ +   D +R    +  LH  N  + +  +  
Sbjct: 185 GARLEQVMRDVELEIYKDSPLETLYNQIINYAETDEIRRLTESKLLHMYNKLLILSEIKE 244

Query: 322 EGDYLD--WTIVNGYVDIKLPNKASTKSEYAW 233
           +  + +  W ++ G V + +P +A+    + W
Sbjct: 245 KSHWRERIWDLIQGMVTLHIPEQAAWTIYFEW 276


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -2

Query: 279 ISNYPTRLLQNLNMRGY*SLL*SKCV*RSHNHVCGM*LGNCKSFYYLNNHI-HMYLILNY 103
           + NY T     ++++GY  +   K   R+ N V    +  C +F+  + ++ H  +++ Y
Sbjct: 390 VENYDTFFAPQMSLKGYKGVHFPKSRVRTMNEVERRIVDGCATFFKTSKYVMHEKMVIEY 449


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 365 RSDVCESQQINVWPFENNCVNRSNCVG 445
           RS  C    I V  F+++C+  +NCVG
Sbjct: 170 RSKHCRLCNICVEKFDHHCIWINNCVG 196


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 316 DYLDWTIVNGYVDIKLPNKASTKSEYAWVLKFTL 215
           DYL ++I+ G + I L + A T+S       FTL
Sbjct: 633 DYLRYSILMGSIGITLFSFAKTRSGILGAASFTL 666


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 195 SVKRIYFKVNFNTHAYSDFVEALLGSLISTYPLTI 299
           SV R+Y   NF      + ++ LLG LI  +P+ +
Sbjct: 500 SVGRMYIN-NFQDKGRQETIDLLLGRLIDQHPVIL 533


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -1

Query: 424 YAIVLKWPNVDLLRLADVTSYLHSGNYKVEMLGNEGDYLD 305
           Y +  K+   DL+ +  +TSY    N+ V+   N+   +D
Sbjct: 32  YLVGWKYSTNDLIVVTTITSYQSFANFLVDYCKNQDQSVD 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,042,736
Number of Sequences: 5004
Number of extensions: 40266
Number of successful extensions: 100
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)