Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C19
         (424 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    25   0.30 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   0.92 
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   1.2  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   1.2  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   4.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   4.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   4.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   4.9  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    21   6.5  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   6.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   6.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   6.5  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   6.5  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   6.5  
AM269505-1|CAK30048.1|   10|Tribolium castaneum mlpt peptide 1 p...    20   8.6  

>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 25.0 bits (52), Expect = 0.30
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +3

Query: 324 PVPYSSTSNQ*PWT--PSAPAATGNSSCQTT 410
           P P  ST+ +  W   PS P+A G+   QTT
Sbjct: 400 PEPTISTTPRPEWARPPSTPSADGSKPVQTT 430



 Score = 20.6 bits (41), Expect = 6.5
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -1

Query: 199 GYYLPELC 176
           GY++PELC
Sbjct: 196 GYHVPELC 203


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.4 bits (48), Expect = 0.92
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 195 YPKSTASTLPAFTGAQAIYNSRESPFIIMRPLLRRRRAVASTCPVPYSSTSNQ*PWTP-S 371
           YP  TA+   +      + N+R SP+    P+ R + A  S  P  Y+   +    TP S
Sbjct: 243 YPAVTATVQLSTCTRTTLKNNRASPY----PMQRPKSASLSPPPHVYNPPDHIQQATPYS 298

Query: 372 APAAT 386
           AP  T
Sbjct: 299 APGPT 303


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
 Frame = +2

Query: 242 SDLQLERISVYYNEASVATAESGG-------KYVPRAILLDLEP 352
           S L+ +++S YYNE+ V  +  G        KY P   ++D  P
Sbjct: 119 STLRRQQMSSYYNESRVMMSPPGNVLNLTMPKYEPNPSIIDPGP 162


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
 Frame = +2

Query: 242 SDLQLERISVYYNEASVATAESGG-------KYVPRAILLDLEP 352
           S L+ +++S YYNE+ V  +  G        KY P   ++D  P
Sbjct: 119 STLRRQQMSSYYNESRVMMSPPGNVLNLTMPKYEPNPSIIDPGP 162


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 352 WFEVEEYGTGHVLATA 305
           W+++ EY  GH L  A
Sbjct: 775 WYQMFEYAIGHWLQKA 790


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 352 WFEVEEYGTGHVLATA 305
           W+++ EY  GH L  A
Sbjct: 775 WYQMFEYAIGHWLQKA 790


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 352 WFEVEEYGTGHVLATA 305
           W+++ EY  GH L  A
Sbjct: 775 WYQMFEYAIGHWLQKA 790


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 352 WFEVEEYGTGHVLATA 305
           W+++ EY  GH L  A
Sbjct: 775 WYQMFEYAIGHWLQKA 790


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 352 WFEVEEYGTGHVLATA 305
           W+++ EY  GH +  A
Sbjct: 201 WYQMFEYAVGHWMQKA 216


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 352 WFEVEEYGTGHVLATA 305
           W+++ EY  GH +  A
Sbjct: 515 WYQMFEYAVGHWMQKA 530


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 352 WFEVEEYGTGHVLATA 305
           W+++ EY  GH +  A
Sbjct: 748 WYQMFEYAVGHWMQKA 763


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 352 WFEVEEYGTGHVLATA 305
           W+++ EY  GH +  A
Sbjct: 748 WYQMFEYAVGHWMQKA 763


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 311 HRSPPSQQRPHYNKR 267
           H+ PP QQ+P+  ++
Sbjct: 205 HQQPPIQQQPNQGQQ 219


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 311 HRSPPSQQRPHYNKR 267
           H+ PP QQ+P+  ++
Sbjct: 207 HQQPPIQQQPNQGQQ 221


>AM269505-1|CAK30048.1|   10|Tribolium castaneum mlpt peptide 1
           protein.
          Length = 10

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +2

Query: 209 GIDPTGVY 232
           G+DPTG+Y
Sbjct: 3   GLDPTGLY 10


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,394
Number of Sequences: 336
Number of extensions: 1583
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9384961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)