Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_C19
         (424 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   145   3e-36
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    85   4e-18
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    79   2e-16
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    76   2e-15
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    28   0.52 
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    27   1.6  
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    27   1.6  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   2.1  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    24   8.5  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    24   8.5  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    24   8.5  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  145 bits (351), Expect = 3e-36
 Identities = 63/100 (63%), Positives = 81/100 (81%)
 Frame = +2

Query: 125 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 304
           MREIVH+QAGQCGNQ+GA FW  I++EHG+D  G+Y GTS+ Q ER++VY+NEA      
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEA------ 54

Query: 305 SGGKYVPRAILLDLEPVTLDAVRSGGYGQLFLPDNFVFGQ 424
           +GGKYVPRA+L+DLEP T+DAV+SG +G LF PDN ++GQ
Sbjct: 55  AGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQ 94


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 85.0 bits (201), Expect = 4e-18
 Identities = 40/96 (41%), Positives = 61/96 (63%)
 Frame = +2

Query: 128 REIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAES 307
           REI+ LQAGQCGNQIG++FW+ +  EHGI P G     +   ++R  V++ ++       
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQS------D 56

Query: 308 GGKYVPRAILLDLEPVTLDAVRSGGYGQLFLPDNFV 415
             +Y+PRAIL+DLEP  ++ + S  YG L+ P+N +
Sbjct: 57  DTRYIPRAILIDLEPRVVNNILSDTYGSLYNPENIL 92


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 79.4 bits (187), Expect = 2e-16
 Identities = 42/102 (41%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
 Frame = +2

Query: 125 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEA-SVATA 301
           MRE++ +  GQ G QIG   WE+   EHGI P G    T + ++ + + Y N+      +
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGF--PTENSEVHKNNSYLNDGFGTFFS 58

Query: 302 ESG-GKYVPRAILLDLEPVTLDAVRSGGYGQLFLPDNFVFGQ 424
           E+G GK+VPR+I +DLEP  +D VR+G Y  LF P+  V G+
Sbjct: 59  ETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGK 100


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 76.2 bits (179), Expect = 2e-15
 Identities = 41/102 (40%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
 Frame = +2

Query: 125 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLER--ISVYYNEASVAT 298
           MREI+ +  GQ G QIG   WE+   EHGI P G     +  Q      S +++E     
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQ-- 58

Query: 299 AESGGKYVPRAILLDLEPVTLDAVRSGGYGQLFLPDNFVFGQ 424
               GKYVPR+I +DLEP  +D VR+G Y  LF P+  + G+
Sbjct: 59  ----GKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGK 96


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 28.3 bits (60), Expect = 0.52
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 236 GTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLEPVT 358
           G+SD+ +  +S +  EAS  +  S    VP+ +L D + +T
Sbjct: 49  GSSDVTMTSVSGHLTEASFPSEYSSWSSVPQDVLFDAQIIT 89


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 285 PLLRRRRAVASTCPVPYSSTSNQ*PWTPSAPAATGNSSCQTTSS 416
           P+L + +  +     P SST++    TPS P   G+ S   TS+
Sbjct: 340 PILPKMKDTSIPAAEPASSTTSARDQTPSTPKDVGSPSTAETSA 383


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 164 NQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERI 265
           N++G    E+++E+  +DPT   +   DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 15/37 (40%), Positives = 26/37 (70%)
 Frame = +3

Query: 312 ASTCPVPYSSTSNQ*PWTPSAPAATGNSSCQTTSSSV 422
           +++ P+P +STS+    T S+P  T ++SC TTS+S+
Sbjct: 202 STSIPIPPTSTSSTD--TNSSPLPTTSTSC-TTSTSI 235



 Score = 26.2 bits (55), Expect = 2.1
 Identities = 15/37 (40%), Positives = 26/37 (70%)
 Frame = +3

Query: 312 ASTCPVPYSSTSNQ*PWTPSAPAATGNSSCQTTSSSV 422
           +++ P+P +STS+    T S+P  T ++SC TTS+S+
Sbjct: 258 STSIPIPPTSTSSTD--TNSSPLPTTSTSC-TTSTSI 291


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 266 SVYYNEASVATAESGGKYVPRAILLDLEPVTLDAVRSGG 382
           +V Y  A  A   SG +     +LLD+ P+TL    +GG
Sbjct: 397 AVAYGAAVQAGVLSGEEGSDNIVLLDVIPLTLGIETTGG 435


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 169 LVTALPGLEVHYFPH 125
           L++A PGLE H F H
Sbjct: 51  LMSAFPGLEPHVFQH 65


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 377 GGYGQLFLPDNFVF 418
           G YG +FLP  F+F
Sbjct: 157 GPYGTMFLPQQFIF 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,468,374
Number of Sequences: 5004
Number of extensions: 24823
Number of successful extensions: 102
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)